YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE15562
Organism: Caenorhabditis elegans
Length: 636 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE15562.

Description E-value Query
Range
Subject
Range
CE16635 - status:Predicted UniProt:O45943 protein_id:CAB16477.1
569.0 [0..1] [636..1]

Back

Predicted Domain #1
Region A:
Residues: [1-119]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFIFNDDLK RQMDFLIDST EHATERIKLC PLLKKFSERF GLNYSTYLSR FHQKLCPQIS  60
   61 NMDTYSVESR IRLLFALSGK VSDEFLARMQ SLGNVELYEN RRIEKFVSND ESLILEDNQ

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 52.031517
Match: PF04435.9
Description: No description for PF04435.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [120-241]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YGQLNDEKCK KFMEFLMQHT KDFVKPMSAT QVFEEFKKRE NSSTHSSMYF ERFRNELAPM  60
   61 IHLWNAYSVG ARVRLMFVLS QSVENEFLTR IEQLGIVQLD DKKRIWKFTS FDEQLKLQGR 120
  121 HG

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 59.508638
Match: PF04435.9
Description: No description for PF04435.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [242-363]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RCSVDIESPE FVRFVQFLVN KTEKSNEPID QRRVFGEFRA LELPPIGAVV ARNMILLDNL  60
   61 SIDLRIRMMF ALSGKMEANF LSEVEKQGIV RLDDQNRIIE YVANDGKMKL KGQHEGRKRA 120
  121 WM

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 44.356547
Match: PF04435.9
Description: No description for PF04435.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [364-569]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TRATGANSGN TGSSGNYSKR SRRDGEGCSS RQETPHMDTA GSFDDSFNFE EFTRMRLSYN  60
   61 DVLKSFATVI DRAPKVKISD DTKGNVDKHK AQQIIDLLKT FTTVVESAPK LEIVDESEVQ 120
  121 CDAVNNNKAQ EADVEGSEYP KISMLNVLDK LDNMLISLES ELLNELLNEI EQLRVGPADK 180
  181 MIPLKLFINA MESMLQNITG KFQTKD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [570-636]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADGSTPAKDF LKTLTHFLKW MKVPLLASFL KKVEEEIEKL GDIEQNVMIG DVNQQVRDLL  60
   61 VFLVVSS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle