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View Structure Prediction Details

Protein: math-49
Organism: Caenorhabditis elegans
Length: 423 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for math-49.

Description E-value Query
Range
Subject
Range
math-24 - status:Partially_confirmed UniProt:O17190 protein_id:AAB70958.1
315.0 [0..1] [423..1]

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Predicted Domain #1
Region A:
Residues: [1-299]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSRSFLLTH TFKDVSKLDE GGSYYSDIEI RHNIPWRLSI SKKDGFLGVN LHCENKECSE  60
   61 TKKWSFQTKF TMKLVAVSGK FFQRTVQHEF QKPEGHGMDK LISWENMLRD YVDEDSIIIE 120
  121 IHADIVSSSG FFEQKCLPNM PADSGKSFVL KHTFKNLSRI LEGEYQYSDV EVHYNIPWKI 180
  181 ELQEENGSFG FHLHHVSEDR TKTVVVEREI KLIAANGKFH SVPKRTCTFG AKSGSVFLIY 240
  241 CNGIEKDYVS NDSIDVEVRV KIIEVKDVPC LEKSFVLSHT IKNMSNIKEG GSIFTDIQT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.522879
Match: 2f1zA
Description: Crystal structure of HAUSP
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [300-423]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WFNIPWRMKI EKQNGFLGLY LLHGKSQPES KKSSIEHDFQ LKIVSPNGKI LSIERGGGVG  60
   61 WDMFLRWDVL EEDYLVNDTI IVEARVWIRK MTGMEDVEKF PGFVIPVGDQ EYSLEKWLEM 120
  121 AFDH

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.64
Match: 2f1xA
Description: Crystal structure of the TRAF-like domain of HAUSP/USP7 bound to a p53 peptide
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle