| Protein: | mab-3 |
| Organism: | Caenorhabditis elegans |
| Length: | 290 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mab-3.
| Description | E-value | Query Range |
Subject Range |
|
|
240.0 | [0..1] | [285..1] |
|
|
167.0 | [0..86] | [258..73] |
|
|
166.0 | [0..13] | [248..26] |
|
|
165.0 | [0..82] | [258..64] |
|
|
159.0 | [0..86] | [270..66] |
|
|
158.0 | [0..86] | [270..66] |
|
Region A: Residues: [1-75] |
1 11 21 31 41 51
| | | | | |
1 MLTEDPVSEI CEAKAVDELA EQEKNYYCQR CLNHGELKPR KGHKPDCRYL KCPCRECTMV 60
61 EQRRQLNNLL SKKKI
|
| Detection Method: |  |
| Confidence: | 15.30103 |
| Match: | 1lpvA |
| Description: | DM domain of Doublesex (dsx) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 1.93139100748852 | bayes_pls_golite062009 |
| DNA binding | 1.52183278923907 | bayes_pls_golite062009 |
| nucleic acid binding | 1.5201954328484 | bayes_pls_golite062009 |
| transcription factor activity | 1.41678145635859 | bayes_pls_golite062009 |
| binding | 1.02525470590224 | bayes_pls_golite062009 |
|
Region A: Residues: [76-151] |
1 11 21 31 41 51
| | | | | |
1 HCTPATQTRD GKRVRDPHCA RCSAHGVLVP LRGHKRTMCQ FVTCECTLCT LVEHRRNLMA 60
61 AQIKLRRSQQ KSRDGK
|
| Detection Method: | |
| Confidence: | 3.01 |
| Match: | 1lpvA |
| Description: | DM domain of Doublesex (dsx) |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 1.82253241097382 | bayes_pls_golite062009 |
| nucleic acid binding | 1.43000113119864 | bayes_pls_golite062009 |
| DNA binding | 1.40796270511692 | bayes_pls_golite062009 |
| transcription factor activity | 1.25105421574697 | bayes_pls_golite062009 |
| binding | 0.989498005264439 | bayes_pls_golite062009 |
|
Region A: Residues: [152-290] |
1 11 21 31 41 51
| | | | | |
1 EPKRNSRRKS KDMDMEMMVV TATDGQKIIG TSASPSPSST TDTMSPSLSM SPPCSPSPLL 60
61 AQYTLTLAAP IPIYPPIPMN QQLISLQQQQ FLMSIIQNMA PSIGQQAPLL PGISAGSVSS 120
121 AAILNEFWSM YLKNYGLQA
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
