YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE14496
Organism: Caenorhabditis elegans
Length: 581 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE14496.

Description E-value Query
Range
Subject
Range
CE14504 - status:Partially_confirmed UniProt:O45886 protein_id:AAC24439.1
649.0 [0..23] [581..75]

Back

Predicted Domain #1
Region A:
Residues: [1-233]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTALRPDRQA HFMQQFPKWQ ILVVTNAEAK EAVLKLCPAV KKLIIQTKLS DFEAVRLNKL  60
   61 NLKLTKLYIS NENLGLVNFP KFEKLRTLHL VVDSTKKLKI VDVVEPRVLK AGFPQTLTRV 120
  121 CLTGIYLTEN LLDHLASLKN LACLDLIGCL VDTRVGAKYV SKLEKMENLD DLSIPPSMFS 180
  181 FSSKVNTSVD FNLCQLKVSK IGIYMDQYDD DNFFSQTRHF LPKNLKILVI FGN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [234-379]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YFPMKKKKNQ LSGNKNILIL FGPNTSLASC PQANLTDVYL LSHLVRRSPY IPQEYSPNFL  60
   61 RNHDVIIGNL AWQFSLIEWK DNNGSRRDVL ELRNRLNVAP DQDVVFEGVT IAPPVILDRL 120
  121 ARFRERRRMP IPAGSPNEFQ VFDRVL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [380-581]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAPPLQVGLV GRVPPPPPPP PPRRRSRSRD RPRLVFSNIG GSARRRTRSA PPAIQDVPAV  60
   61 PVRRSDSMLT NPPSPVGTRT GAVFTATLPM ITPIGGPSAA SQIGGTAPVT TEPATSVLNR 120
  121 GFIETLTSTS RATIGSSESR RLSTASQAST SLNSEMTIQT TATASPERLP APPGNPPARV 180
  181 APSSLNEQNN NDNGPTQNGN EH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle