| Protein: | gld-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 463 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gld-1.
| Description | E-value | Query Range |
Subject Range |
|
|
380.0 | [0..1] | [463..1] |
|
Region A: Residues: [1-130] |
1 11 21 31 41 51
| | | | | |
1 MPSCTTPTYG VSTQLESQSS ESPSRSSVMT PTSLDGDNSP RKRFPIIDNV PADRWPSTRR 60
61 DGWSSVRAPP PARLTLSTNN RHIMSPISSA YSQTPNSLLS PAMFNPKSRS IFSPTLPATP 120
121 MSYGKSSMDK
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [131-192] |
1 11 21 31 41 51
| | | | | |
1 SLFSPTATEP IEVEATVEYL ADLVKEKKHL TLFPHMFSNV ERLLDDEIGR VRVALFQTEF 60
61 PR
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [193-356] |
1 11 21 31 41 51
| | | | | |
1 VELPEPAGDM ISITEKIYVP KNEYPDYNFV GRILGPRGMT AKQLEQDTGC KIMVRGKGSM 60
61 RDKSKESAHR GKANWEHLED DLHVLVQCED TENRVHIKLQ AALEQVKKLL IPAPEGTDEL 120
121 KRKQLMELAI INGTYRPMKS PNPARVMTAV PLLSPTPLRS SGPV
|
| Detection Method: | |
| Confidence: | 51.69897 |
| Match: | 2bl5A |
| Description: | Solution structure of the KH-QUA2 region of the Xenopus STAR-GSG Quaking protein. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.12000404411947 | bayes_pls_golite062009 |
| nucleic acid binding | 1.43118614950511 | bayes_pls_golite062009 |
| mRNA binding | 0.59869578469175 | bayes_pls_golite062009 |
| protein binding | 0.446932489882167 | bayes_pls_golite062009 |
| RNA binding | 0.332356996824116 | bayes_pls_golite062009 |
|
Region A: Residues: [357-463] |
1 11 21 31 41 51
| | | | | |
1 LMSPTPGSGL PSTTFGGSIL SPTLTASNLL GSNVFDYSLL SPSMFDSFSS LQLASDLTFP 60
61 KYPTTTSFVN SFPGLFTSAS SFANQTNTNV SPSGASPSAS SVNNTSF
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
