YRC Public Data Repository - Protein Structure Prediction

Protein:	CE14026
Organism:	Caenorhabditis elegans
Length:	234 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE14026.

Description	E-value	Query Range	Subject Range
gi\|39581609, gi\|... - gi\|39581609\|emb\|CAE58394.1\| Hypothetical protein CBG01523 [Caenorhabditis briggsae], gi\|187038159\|em... gi\|157760099 - gi\|157760099\|ref\|XP_001672392.1\| Hypothetical protein CBG01523 [Caenorhabditis briggsae AF16]	154.0	[0..1]	[226..1]
gi\|73982509 - gi\|73982509\|ref\|XP_861946.1\| PREDICTED: similar to BRAF35/HDAC2 complex isoform 6 [Canis familiaris]	133.0	[0..2]	[207..335]
gi\|109106592 - gi\|109106592\|ref\|XP_001112529.1\| PREDICTED: similar to BRAF35/HDAC2 complex isoform 2 [Macaca mulatt...	132.0	[0..2]	[207..336]
gi\|114637260, gi... - gi\|114637260\|ref\|XP_001161393.1\| PREDICTED: BRAF35/HDAC2 complex isoform 2 [Pan troglodytes], gi\|114...	131.0	[0..2]	[207..342]
PHF21A - PHD finger protein 21A gi\|167773799 - gi\|167773799\|gb\|ABZ92334.1\| PHD finger protein 21A [synthetic construct]	130.0	[0..2]	[207..335]
gi\|76636358, gi\|... - gi\|76636360\|ref\|XP_884276.1\| PREDICTED: similar to BRAF35/HDAC2 complex isoform 9 [Bos taurus], gi\|7...	129.0	[0..2]	[207..334]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDVDDDILM IDEKQDTSES PEEEKFDANA YISTLIKFMK SIDKSTDKEF SELVAKTWSL  60
   61 SSSTNNFYTD SFTMDSGNVS KLNPNMLNPQ KRIAGTQRLM YAPPQIL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [108-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKSGFVIDKS GASSSSAPGG MKKLKKLVPV IDDSIYCTSE QPCAVCHGVS LAGNQVLACR  60
   61 RCRDCYHMAC SIPTVSIEEA SEPSFKYYCK TCLVSKKVID SNRSRSPSPA KLDAKRMKMG 120
  121 RDRTTKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.69897
Match:	2ysmA
Description:	No description for 2ysmA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits