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View Structure Prediction Details

Protein: CE14026
Organism: Caenorhabditis elegans
Length: 234 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE14026.

Description E-value Query
Range
Subject
Range
gi|39581609, gi|... - gi|39581609|emb|CAE58394.1| Hypothetical protein CBG01523 [Caenorhabditis briggsae], gi|187038159|em...
gi|157760099 - gi|157760099|ref|XP_001672392.1| Hypothetical protein CBG01523 [Caenorhabditis briggsae AF16]
154.0 [0..1] [226..1]
gi|73982509 - gi|73982509|ref|XP_861946.1| PREDICTED: similar to BRAF35/HDAC2 complex isoform 6 [Canis familiaris]
133.0 [0..2] [207..335]
gi|109106592 - gi|109106592|ref|XP_001112529.1| PREDICTED: similar to BRAF35/HDAC2 complex isoform 2 [Macaca mulatt...
132.0 [0..2] [207..336]
gi|114637260, gi... - gi|114637260|ref|XP_001161393.1| PREDICTED: BRAF35/HDAC2 complex isoform 2 [Pan troglodytes], gi|114...
131.0 [0..2] [207..342]
PHF21A - PHD finger protein 21A
gi|167773799 - gi|167773799|gb|ABZ92334.1| PHD finger protein 21A [synthetic construct]
130.0 [0..2] [207..335]
gi|76636358, gi|... - gi|76636360|ref|XP_884276.1| PREDICTED: similar to BRAF35/HDAC2 complex isoform 9 [Bos taurus], gi|7...
129.0 [0..2] [207..334]

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Predicted Domain #1
Region A:
Residues: [1-107]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDVDDDILM IDEKQDTSES PEEEKFDANA YISTLIKFMK SIDKSTDKEF SELVAKTWSL  60
   61 SSSTNNFYTD SFTMDSGNVS KLNPNMLNPQ KRIAGTQRLM YAPPQIL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.553 N/A N/A a.23.4 Mitochondrial import receptor subunit Tom20
View Download 0.519 N/A N/A a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View Download 0.459 N/A N/A a.4.1 Homeodomain-like
View Download 0.436 N/A N/A a.28.2 Colicin E immunity proteins
View Download 0.423 N/A N/A a.24.13 Domain of the SRP/SRP receptor G-proteins

Predicted Domain #2
Region A:
Residues: [108-234]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKSGFVIDKS GASSSSAPGG MKKLKKLVPV IDDSIYCTSE QPCAVCHGVS LAGNQVLACR  60
   61 RCRDCYHMAC SIPTVSIEEA SEPSFKYYCK TCLVSKKVID SNRSRSPSPA KLDAKRMKMG 120
  121 RDRTTKL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.69897
Match: 2ysmA
Description: No description for 2ysmA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle