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View Structure Prediction Details

Protein: clic-1
Organism: Caenorhabditis elegans
Length: 226 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for clic-1.

Description E-value Query
Range
Subject
Range
gi|225494, gi|510 - gi|510|emb|CAA28542.1| unnamed protein product [Bos taurus], gi|225494|prf||1304303B clathrin LCa
187.0 [0..18] [224..5]
gi|187023318, gi... - gi|39581120|emb|CAE73198.1| Hypothetical protein CBG20601 [Caenorhabditis briggsae], gi|187023318|em...
gi|157760699 - gi|157760699|ref|XP_001672692.1| Hypothetical protein CBG20601 [Caenorhabditis briggsae AF16]
186.0 [0..1] [224..1]
gi|73971344 - gi|73971344|ref|XP_866787.1| PREDICTED: similar to clathrin, light polypeptide A isoform a isoform 3...
186.0 [0..18] [224..5]
gi|30585415, gi|... - gi|60653991|gb|AAX29688.1| clathrin light polypeptide [synthetic construct], gi|30585415|gb|AAP36980...
183.0 [0..27] [224..20]
gi|71895347, gi|... - gi|71895347|ref|NP_001025780.1| clathrin, light polypeptide [Gallus gallus], gi|53130886|emb|CAG3177...
183.0 [0..16] [223..1]
gi|61362516, gi|... - gi|61362522|gb|AAX42237.1| clathrin light polypeptide [synthetic construct], gi|61362516|gb|AAX42236...
gi|158255592, gi... - gi|4502899|ref|NP_001824.1| clathrin, light polypeptide A isoform a [Homo sapiens], gi|307118|gb|AAA...
182.0 [0..27] [224..20]
CLCA_MOUSE - Clathrin light chain A OS=Mus musculus GN=Clta PE=1 SV=1
181.0 [0..16] [224..7]

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Predicted Domain #1
Region A:
Residues: [1-113]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDPVADFLA REQNLFADFD GAPPAAAAAN PDAPEADAPA PALDDDFGDL QIAGDEPPPV  60
   61 VHPTDSGVDL DGLVDDNAAA PAIVVPAVEP MVNGNHSASS GGSKGPSPIL STV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [114-226]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRIEAEKIRL WKAQQEQLLS KKDEAEEKKK IELRANAKKE LEEWYKQREK TLQLSHDENL  60
   61 KNEKSNQELF AKQQDGDAQW ETVNKLVDQQ KSKSGKDLSR LKTLLAGLKH AGK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.0
Match: 1xi4J
Description: Clathrin D6 Coat
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle