YRC Public Data Repository - Protein Structure Prediction

Protein:	clic-1
Organism:	Caenorhabditis elegans
Length:	226 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for clic-1.

Description	E-value	Query Range	Subject Range
gi\|225494, gi\|510 - gi\|510\|emb\|CAA28542.1\| unnamed protein product [Bos taurus], gi\|225494\|prf\|\|1304303B clathrin LCa	187.0	[0..18]	[224..5]
gi\|187023318, gi... - gi\|39581120\|emb\|CAE73198.1\| Hypothetical protein CBG20601 [Caenorhabditis briggsae], gi\|187023318\|em... gi\|157760699 - gi\|157760699\|ref\|XP_001672692.1\| Hypothetical protein CBG20601 [Caenorhabditis briggsae AF16]	186.0	[0..1]	[224..1]
gi\|73971344 - gi\|73971344\|ref\|XP_866787.1\| PREDICTED: similar to clathrin, light polypeptide A isoform a isoform 3...	186.0	[0..18]	[224..5]
gi\|30585415, gi\|... - gi\|60653991\|gb\|AAX29688.1\| clathrin light polypeptide [synthetic construct], gi\|30585415\|gb\|AAP36980...	183.0	[0..27]	[224..20]
gi\|71895347, gi\|... - gi\|71895347\|ref\|NP_001025780.1\| clathrin, light polypeptide [Gallus gallus], gi\|53130886\|emb\|CAG3177...	183.0	[0..16]	[223..1]
gi\|61362516, gi\|... - gi\|61362522\|gb\|AAX42237.1\| clathrin light polypeptide [synthetic construct], gi\|61362516\|gb\|AAX42236... gi\|158255592, gi... - gi\|4502899\|ref\|NP_001824.1\| clathrin, light polypeptide A isoform a [Homo sapiens], gi\|307118\|gb\|AAA...	182.0	[0..27]	[224..20]
CLCA_MOUSE - Clathrin light chain A OS=Mus musculus GN=Clta PE=1 SV=1	181.0	[0..16]	[224..7]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDPVADFLA REQNLFADFD GAPPAAAAAN PDAPEADAPA PALDDDFGDL QIAGDEPPPV  60
   61 VHPTDSGVDL DGLVDDNAAA PAIVVPAVEP MVNGNHSASS GGSKGPSPIL STV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [114-226]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRIEAEKIRL WKAQQEQLLS KKDEAEEKKK IELRANAKKE LEEWYKQREK TLQLSHDENL  60
   61 KNEKSNQELF AKQQDGDAQW ETVNKLVDQQ KSKSGKDLSR LKTLLAGLKH AGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.0
Match:	1xi4J
Description:	Clathrin D6 Coat
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits