YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE13175
Organism: Caenorhabditis elegans
Length: 289 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE13175.

Description E-value Query
Range
Subject
Range
gi|157762476 - gi|157762476|ref|XP_001673580.1| Hypothetical protein CBG23421 [Caenorhabditis briggsae AF16]
gi|187021024, gi... - gi|39592207|emb|CAE75428.1| Hypothetical protein CBG23421 [Caenorhabditis briggsae], gi|187021024|em...
254.0 [0..1] [289..1]
gi|109478960 - gi|109478960|ref|XP_001064113.1| PREDICTED: similar to CG10053-PA [Rattus norvegicus]
217.0 [0..4] [284..159]
gi|220944386, gi... - gi|220954340|gb|ACL89713.1| CG10053-PA [synthetic construct], gi|220944386|gb|ACL84736.1| CG10053-PA...
FBpp0308784, CG1... - This gene is referred to in FlyBase by the symbol Dmel\CG10053 (CG10053, FBgn0037490). It is a prote...
194.0 [0..1] [284..1]
gi|62201853, gi|... - gi|82994617|ref|XP_930498.1| PREDICTED: similar to CG10053-PA isoform 2 [Mus musculus], gi|82994615|...
190.0 [0..4] [284..7]
gi|114577063 - gi|114577063|ref|XP_515407.2| PREDICTED: similar to MGC137508 protein [Pan troglodytes]
187.0 [0..4] [284..29]
gi|73980731 - gi|73980731|ref|XP_532830.2| PREDICTED: similar to CG10053-PA [Canis familiaris]
185.0 [0..4] [284..3]
CCD75_BOVIN - Coiled-coil domain-containing protein 75 OS=Bos taurus GN=CCDC75 PE=2 SV=1
183.0 [0..4] [284..7]

Back

Predicted Domain #1
Region A:
Residues: [1-188]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDDEDDYMS AEILQGVSEQ PVGIAKSRAH KRELQINSRF EESRDTFKPK RPTSHAEREK  60
   61 ERRDEALAKP ISHESKGFAL MAKMGFKPGM TLGKQREDEI RITEPIGVDI KANRKGLGHE 120
  121 VEAVQERNER VEAVMQKMKE QAAKHEELID DYSKRRKLDA NSKQLVKDIR SCRKVCEELD 180
  181 HRIGKKVP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [189-289]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVSWFWRSYK VAQEETTSYH KKVEKEDEEY KYSNGLAAPE DPNYDFTMST EILEEALSTI  60
   61 NNYLRDGHFY CIWCGANFSS PEDMIEHCPG STRRAHHGED E

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle