YRC Public Data Repository - Protein Structure Prediction

Protein:	CE12896
Organism:	Caenorhabditis elegans
Length:	287 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE12896.

Description	E-value	Query Range	Subject Range
gi\|109099266 - gi\|109099266\|ref\|XP_001111568.1\| PREDICTED: similar to syntaxin 2 isoform 2 [Macaca mulatta]	203.0	[0..31]	[280..131]
gi\|73958357 - gi\|73958357\|ref\|XP_547038.2\| PREDICTED: similar to Syntaxin-1B2 (Syntaxin 1B) (P35B) [Canis familiar...	189.0	[0..5]	[255..18]
gi\|303605 - gi\|303605\|dbj\|BAA03436.1\| epimorphin [Homo sapiens]	181.0	[0..10]	[286..15]
gi\|118404044, gi... - gi\|118404044\|ref\|NP_001072191.1\| syntaxin 1A (brain) [Xenopus (Silurana) tropicalis], gi\|110645670\|g...	180.0	[0..8]	[280..14]
gi\|114647809 - gi\|114647809\|ref\|XP_001138080.1\| PREDICTED: syntaxin 2 [Pan troglodytes]	178.0	[0..10]	[280..15]
gi\|220777, gi\|285304 - pir\|\|A38141 neuronal cell membrane antigen HPC-1 - rat (fragment), gi\|220777\|dbj\|BAA01231.1\| HPC-1 ...	178.0	[0..24]	[280..40]

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Predicted Domain #1

Region A:
Residues: [1-287]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHQISGINAA SPEKNNSKLA DVSLQQFLAN VDEIRHVLTT LSADRHAIYM EQVESLAAGC  60
   61 SDTAKCRKLN DHVDKFIAQA RGIRRRLADA SEELVQYPES RVGSGRARHE QIQMLIVSLE 120
  121 GIMSQFADDQ ASYKAEAAKK IAAYLRKQNI EVTDSEIDGA IENGSLFQLT RNINLGVAQK 180
  181 KALFDDMKNR ATDIMILEKQ IREVEELFVD MQLLVQSQGE TVDRIETSVI RAEEYAEQAQ 240
  241 QNVRQAVVLR RKNRKWKIVT CIALIVLLLV VVYLLSHFLG AIIPGWK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.69897
Match:	1dn1B
Description:	Syntaxin 1A N-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits