YRC Public Data Repository - Protein Structure Prediction

Protein:	CE12870
Organism:	Caenorhabditis elegans
Length:	276 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE12870.

Description	E-value	Query Range	Subject Range
gi\|109451848, gi... - gi\|109451848\|emb\|CAK54795.1\| C22orf25 [synthetic construct], gi\|109451270\|emb\|CAK54496.1\| C22orf25 [... HGNC:25439\|Ensem... - 22 open reading frame 25 C22orf25 - chromosome 22 open reading frame 25	369.0	[0..1]	[273..1]
gi\|157763514 - gi\|157763514\|ref\|XP_001674099.1\| Hypothetical protein CBG09494 [Caenorhabditis briggsae AF16] gi\|187031808, gi... - gi\|39593238\|emb\|CAE64708.1\| Hypothetical protein CBG09494 [Caenorhabditis briggsae], gi\|187031808\|em...	369.0	[0..1]	[276..1]
gi\|149019786, gi... - gi\|62658192\|ref\|XP_341011.2\| PREDICTED: similar to Ser/Thr-rich protein T10 in DGCR region [Rattus n...	360.0	[0..1]	[273..1]
gi\|73995915 - gi\|73995915\|ref\|XP_850154.1\| PREDICTED: similar to Ser/Thr-rich protein T10 in DGCR region [Canis fa...	360.0	[0..1]	[273..1]
gi\|74219739, gi\|... - gi\|74227275\|dbj\|BAE21736.1\| unnamed protein product [Mus musculus], gi\|74219739\|dbj\|BAE40462.1\| unna...	359.0	[0..1]	[273..1]
TNG2_BOVIN - Transport and Golgi organization protein 2 homolog OS=Bos taurus GN=TANGO2 PE=2 SV=1	347.0	[0..1]	[273..1]
gi\|56119064, gi\|... - gi\|56119064\|ref\|NP_001007837.1\| hypothetical protein LOC416784 [Gallus gallus], gi\|53136540\|emb\|CAG3...	344.0	[0..1]	[275..1]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCITFIKTAK SSLDKYKLIL LNNRDEQLLR PTKEMHWHDG ILSGVDKQEN ARGTWLGLNE  60
   61 NGRIGMMLSI TQTQESKNLH APSRGGIVNE FLNANDTSKM IESLKKCASK YNGFQLVAVE 120
  121 KNSTGLYEVR TLANQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [136-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QVDEIEVCQL KDEYHVVSNS PPTKPYQKAV QGKKLLREHL ENSDQFSVDQ IFEKLLSIAK  60
   61 NTTQWYPDAQ LQYQTQNVEE YNRPLSAIFI KYPEGTRMYG TRCHTLITVD QKDKINILER 120
  121 RLLPEQSTWH DARFEFVLNG S

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits