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View Structure Prediction Details

Protein: CE12870
Organism: Caenorhabditis elegans
Length: 276 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE12870.

Description E-value Query
Range
Subject
Range
gi|109451848, gi... - gi|109451848|emb|CAK54795.1| C22orf25 [synthetic construct], gi|109451270|emb|CAK54496.1| C22orf25 [...
HGNC:25439|Ensem... - 22 open reading frame 25
C22orf25 - chromosome 22 open reading frame 25
369.0 [0..1] [273..1]
gi|157763514 - gi|157763514|ref|XP_001674099.1| Hypothetical protein CBG09494 [Caenorhabditis briggsae AF16]
gi|187031808, gi... - gi|39593238|emb|CAE64708.1| Hypothetical protein CBG09494 [Caenorhabditis briggsae], gi|187031808|em...
369.0 [0..1] [276..1]
gi|149019786, gi... - gi|62658192|ref|XP_341011.2| PREDICTED: similar to Ser/Thr-rich protein T10 in DGCR region [Rattus n...
360.0 [0..1] [273..1]
gi|73995915 - gi|73995915|ref|XP_850154.1| PREDICTED: similar to Ser/Thr-rich protein T10 in DGCR region [Canis fa...
360.0 [0..1] [273..1]
gi|74219739, gi|... - gi|74227275|dbj|BAE21736.1| unnamed protein product [Mus musculus], gi|74219739|dbj|BAE40462.1| unna...
359.0 [0..1] [273..1]
TNG2_BOVIN - Transport and Golgi organization protein 2 homolog OS=Bos taurus GN=TANGO2 PE=2 SV=1
347.0 [0..1] [273..1]
gi|56119064, gi|... - gi|56119064|ref|NP_001007837.1| hypothetical protein LOC416784 [Gallus gallus], gi|53136540|emb|CAG3...
344.0 [0..1] [275..1]

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Predicted Domain #1
Region A:
Residues: [1-135]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCITFIKTAK SSLDKYKLIL LNNRDEQLLR PTKEMHWHDG ILSGVDKQEN ARGTWLGLNE  60
   61 NGRIGMMLSI TQTQESKNLH APSRGGIVNE FLNANDTSKM IESLKKCASK YNGFQLVAVE 120
  121 KNSTGLYEVR TLANQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.675 N/A N/A d.87.1 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
View Download 0.562 N/A N/A d.87.1 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
View Download 0.504 N/A N/A d.58.4 Dimeric alpha+beta barrel
View Download 0.462 N/A N/A d.87.1 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
View Download 0.442 N/A N/A d.87.1 FAD/NAD-linked reductases, dimerisation (C-terminal) domain

Predicted Domain #2
Region A:
Residues: [136-276]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QVDEIEVCQL KDEYHVVSNS PPTKPYQKAV QGKKLLREHL ENSDQFSVDQ IFEKLLSIAK  60
   61 NTTQWYPDAQ LQYQTQNVEE YNRPLSAIFI KYPEGTRMYG TRCHTLITVD QKDKINILER 120
  121 RLLPEQSTWH DARFEFVLNG S

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle