YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE12576
Organism: Caenorhabditis elegans
Length: 365 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE12576.

Description E-value Query
Range
Subject
Range
gi|157761049 - gi|157761049|ref|XP_001672867.1| Hypothetical protein CBG10437 [Caenorhabditis briggsae AF16]
gi|187031045, gi... - gi|39584307|emb|CAE65471.1| Hypothetical protein CBG10437 [Caenorhabditis briggsae], gi|187031045|em...
227.0 [0..13] [364..10]

Back

Predicted Domain #1
Region A:
Residues: [1-365]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQQQTCSTS MKEKLFNLAV SNVISNAINI GNRLNLFKTL ADISSEKGPV LPEQLAEAAG  60
   61 CKERYIREWC NCMACGQIIE VNEEEKFWIA AENVQELSNS SFEAVMNGMM ATLLEPLDEL 120
  121 IDCFRKDGPL GLEYAQFTKF QYFMGTMSQA LHEKHVVADM LPDIGNGVVE KLEAGGVRVL 180
  181 DVGCGGGFHS SLLAEQYPKS HFVGLDIGED AIRQAKQRKT KSGAAFNNLE FIECDAGKMP 240
  241 EIWTDSFDLV LIFDACHDQR RPDLCVQEIH RVLKPSGMFA MVEVLGSSNV YTDKAAMGPL 300
  301 AAMMYGCSMF HCLPVGSNCP DALCYGAMWG QKRATDLLKK CGFPDVKVID TPYFPINVMY 360
  361 CAQKN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 41.69897
Match: 1kywA
Description: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.723277178398499 bayes_pls_golite062009
transferase activity 0.64512166557639 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.54403439349476 bayes_pls_golite062009
methyltransferase activity 0.54389223881989 bayes_pls_golite062009
transcription regulator activity 0.4843036104266 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle