| Protein: | CE12502 |
| Organism: | Caenorhabditis elegans |
| Length: | 630 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE12502.
| Description | E-value | Query Range |
Subject Range |
|
|
377.0 | [0..1] | [540..130] |
|
Region A: Residues: [1-539] |
1 11 21 31 41 51
| | | | | |
1 MSEEDEPKKA AADAADGEDD DKENLDDSRA NSSLANSTFV TSGRIQNEKA DVEVDGTLDL 60
61 ANLSLTNLEK SFAAEYSEVK HLKISGNCFQ KFTYIKLFPK CQIIDARDCQ INKFIADFNY 120
121 NLLELHLARN QLKETNQLGR FENLKILDLS NNLIEPPVSF SLKNLEILNL SGNFLNEIPD 180
181 LSKCVALQTI SLADNKISDL TTITKLICPT NLKNLDISSN SIEDLSQFSV LSTFKKLEEF 240
241 VVAGNPSITS VLDSDLFDYR SYIFACCSEQ LHTIDGQKIE DQVQTEGEWL ALQGSIKKIG 300
301 PGNHDALCQQ IASHFPDSGP PTPAQKSCHK ALEKRRSMKV PEKHLEEFSE DTDRTENSVY 360
361 SPFREWNGKI GALMTPEASG SSRRIPVNKN LRMCSPPEAR KNKTFKFQNE TSPNRYPENF 420
421 RPLGSTRSIS TETVICSSRT EVSFTVDGRS ESTPLPRIDC APLERKEQEP EQRHTPSVAD 480
481 VTYVGEESDG ELKQKVAYLE KSVDELKIQN ENLTAINDRL VDTLEEFKAE QAEMWKAIR
|
| Detection Method: |  |
| Confidence: | 47.09691 |
| Match: | 2a0zA |
| Description: | The molecular structure of toll-like receptor 3 ligand binding domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [540-630] |
1 11 21 31 41 51
| | | | | |
1 NMIPTPQNVI SNFLVENEDG HHVHQVRWDM PAVKEFRIFV DGNQCGQIKG KNNSARITDL 60
61 TSNEPHTVQI QAVGNNGLHG EISKKLHIVP K
|
| Detection Method: | |
| Confidence: | 1.39 |
| Match: | 1k85A |
| Description: | Fibronectin type III domain from chitinase A1. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.47486653370726 | bayes_pls_golite062009 |
| protein binding | 1.20510385243287 | bayes_pls_golite062009 |
| cytokine binding | 0.404578339069944 | bayes_pls_golite062009 |
| signal transducer activity | 0.285758493713488 | bayes_pls_golite062009 |
| molecular transducer activity | 0.285758493713488 | bayes_pls_golite062009 |
