YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE12232
Organism: Caenorhabditis elegans
Length: 280 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE12232.

Description E-value Query
Range
Subject
Range
gi|73991918 - gi|73991918|ref|XP_865758.1| PREDICTED: similar to ribophorin II precursor isoform 8 [Canis familiar...
358.0 [0..15] [278..31]
gi|38197008 - gi|38197008|gb|AAH13028.2| RPN2 protein [Homo sapiens]
357.0 [0..15] [278..17]
gi|114681892 - gi|114681892|ref|XP_514629.2| PREDICTED: hypothetical protein [Pan troglodytes]
356.0 [0..15] [280..299]
gi|74150483 - gi|74150483|dbj|BAE32275.1| unnamed protein product [Mus musculus]
353.0 [0..15] [278..395]

Back

Predicted Domain #1
Region A:
Residues: [1-139]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLLVLLTI ASVALAAVDD VAVNNFKVGI LAKDQQPSDE NLKTVALFSK LPNELKADAS  60
   61 QRLYVSFTVA KKSDNAKVKP HQVFLRFVAQ NGEDVVVVVN PDANGNYVYD NVLRTAAKSF 120
  121 RNLSGQFKIS LLVGDVTIK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [140-280]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPINWQFANI DAALPVAYEP TPKSQQVHFE PLNEISHIFR QPEKRPSALI SDLFTIICLS  60
   61 PLLILVVLWS QVGINFQNAP ASPWVPIFHV GLIGIFGIYF MFWVQFDMFV TLKYLAVLGF 120
  121 LTFVAGNRVL RAISESKQKS E

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle