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View Structure Prediction Details

Protein: CE12232
Organism: Caenorhabditis elegans
Length: 280 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE12232.

Description E-value Query
Range
Subject
Range
gi|73991918 - gi|73991918|ref|XP_865758.1| PREDICTED: similar to ribophorin II precursor isoform 8 [Canis familiar...
358.0 [0..15] [278..31]
gi|38197008 - gi|38197008|gb|AAH13028.2| RPN2 protein [Homo sapiens]
357.0 [0..15] [278..17]
gi|114681892 - gi|114681892|ref|XP_514629.2| PREDICTED: hypothetical protein [Pan troglodytes]
356.0 [0..15] [280..299]
gi|74150483 - gi|74150483|dbj|BAE32275.1| unnamed protein product [Mus musculus]
353.0 [0..15] [278..395]

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Predicted Domain #1
Region A:
Residues: [1-139]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLLVLLTI ASVALAAVDD VAVNNFKVGI LAKDQQPSDE NLKTVALFSK LPNELKADAS  60
   61 QRLYVSFTVA KKSDNAKVKP HQVFLRFVAQ NGEDVVVVVN PDANGNYVYD NVLRTAAKSF 120
  121 RNLSGQFKIS LLVGDVTIK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.476 N/A N/A b.55.1 PH domain-like
View Download 0.240 N/A N/A d.233.1 Inhibitor of vertebrate lysozyme, Ivy

Predicted Domain #2
Region A:
Residues: [140-280]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPINWQFANI DAALPVAYEP TPKSQQVHFE PLNEISHIFR QPEKRPSALI SDLFTIICLS  60
   61 PLLILVVLWS QVGINFQNAP ASPWVPIFHV GLIGIFGIYF MFWVQFDMFV TLKYLAVLGF 120
  121 LTFVAGNRVL RAISESKQKS E

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle