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View Structure Prediction Details

Protein: odc-1
Organism: Caenorhabditis elegans
Length: 422 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for odc-1.

Description E-value Query
Range
Subject
Range
gi|28808010, gi|... - gi|28899758|ref|NP_799363.1| diaminopimelate decarboxylase [Vibrio parahaemolyticus RIMD 2210633], g...
gi|28808010 - gi|28808010|dbj|BAC61247.1| diaminopimelate decarboxylase [Vibrio parahaemolyticus RIMD 2210633]
gi|149747846, gi... - gi|153838760|ref|ZP_01991427.1| diaminopimelate decarboxylase [Vibrio parahaemolyticus AQ3810], gi|1...
357.0 [0..2] [420..1]

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Predicted Domain #1
Region A:
Residues: [1-422]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISQFEIIGD NKIGVLPKQV DQLQMCRDIA ASKDLQENDS SFMLVDLDKI IERFQLWKRE  60
   61 LPMIEPFYAV KCNTDLVLIR ILASLGCGFD CASKDEIDIV MGTGVSAERI IYANPCKTRS 120
  121 FIAHAMDRDV KMMTFDNPEE LLKIAKLHPN AEMILRIAVS DPTATCPLNL KFGADPIIAA 180
  181 PQLLKTASEE GINVVGISFH VGSGCNDASA YRNALQHAKN LCEIGEGLGF KMDIIDMGGG 240
  241 FPGAEHHNPF EKIAETIRDA LDEFFPDTNK RLIAEPGRFF AAGPFSLVAN IIHATEVPAS 300
  301 KITKDPKDCA DHGYMYYIND GVYGSFNCIL FDHAHPIGSP LFDTDRNEKF MSTIWGPTCD 360
  361 SLDLVEDKKL MPKMNVGEWL YYPDMGAYTL AAATTFNGFS KPVPMYVMSE EMWESIRDST 420
  421 HV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 96.69897
Match: 2oo0A
Description: No description for 2oo0A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle