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View Structure Prediction Details

Protein: CE11832
Organism: Caenorhabditis elegans
Length: 314 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE11832.

Description E-value Query
Range
Subject
Range
gi|119193086, gi... - gi|90305935|gb|EAS35566.1| hypothetical protein CIMG_00920 [Coccidioides immitis RS], gi|119193086|r...
118.0 [0..54] [295..22]

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Predicted Domain #1
Region A:
Residues: [1-83]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRSEVKQQT VGIEIAREND SSSRPIIRVL FSVQLLSMIA VTTHHTAMPF LVKIANKSHF  60
   61 LPTTSVFMME ILKLSFCLII VLI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [84-213]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETRSIRKTAK KLHKNIWQNW WETMKVSVPA LVYAVQNNLY YVALANIDAT TYSVTLQLRI  60
   61 LTTAILSVVL LSKKLSGYQW MAQGMALIGE LFLKYKLDNS NSRREIAGNF WLGLASVLGM 120
  121 CWTSAFAGNI 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.23
Match: 2i68A
Description: No description for 2i68A was found.

Predicted Domain #3
Region A:
Residues: [214-314]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FHGWTWIVWL VTIGNSIGGL CISLVMKYAD NVMKTYCQSL AIGFTSIVSI CLGDRLLSLY  60
   61 LGYGVFLVTS SVVVYSLYPA TQPTTPNYKP LKQDITEDTD E

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle