YRC Public Data Repository - Protein Structure Prediction

Protein:	CE11420
Organism:	Caenorhabditis elegans
Length:	278 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE11420.

Description	E-value	Query Range	Subject Range
RM24_CAEBR - Probable 39S ribosomal protein L24, mitochondrial OS=Caenorhabditis briggsae GN=mrpl-24 PE=3 SV=1 gi\|157747279 - gi\|157747279\|ref\|XP_001668734.1\| Hypothetical protein CBG12482 [Caenorhabditis briggsae AF16]	357.0	[0..1]	[278..1]
mRpL24-PA - The gene mitochondrial ribosomal protein L24 is referred to in FlyBase by the symbol Dmel\mRpL24 (CG...	232.0	[0..22]	[278..16]
RM24_DROPS - Probable 39S ribosomal protein L24, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=mRpL2... RM24_DROPS - Probable 39S ribosomal protein L24, mitochondrial precursor - Drosophila pseudoobscura (Fruit fly)	231.0	[0..22]	[278..16]
gi\|58389458, gi\|... - gi\|58389458\|ref\|XP_317046.2\| AGAP008405-PA [Anopheles gambiae str. PEST], gi\|55237285\|gb\|EAA12224.2\|... AGAP008405-PA - mRpL24: 39S ribosomal protein L24, mitochondrial\|protein_coding\|3R:10362610:10363448:-1\|gene:AGAP008...	219.0	[0..22]	[278..19]
gi\|114560324, gi... - gi\|114560326\|ref\|XP_001166859.1\| PREDICTED: mitochondrial ribosomal protein L24 isoform 3 [Pan trogl... MRPL24 - mitochondrial ribosomal protein L24	210.0	[0..71]	[278..18]
gi\|12843464 - gi\|12843464\|dbj\|BAB25991.1\| unnamed protein product [Mus musculus]	209.0	[0..72]	[278..19]
RM24_RAT - 39S ribosomal protein L24, mitochondrial OS=Rattus norvegicus GN=Mrpl24 PE=2 SV=1	208.0	[0..71]	[278..18]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTSRALRIP RKPFVDLDYA RHMPSAYVER TKRTVPRKVF GDRFGAPDIK MYYVHPDDYV  60
   61 PSHRRPWEDK QISSHLHRSD KYFSAQLSNQ YFNLRRPKSE RMADTE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [107-278]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WTFFPGDLVQ VMVGKDKGRQ GLVLTTSRDS SDVIVDGLHT KLGEDMEGSE KLGVDKTLRW  60
   61 QEQPLSVSKK QVMLVDPNDE QPCEARWQLN GPGDEYIRVS TRSGYEIPIP SQAKVTYEYL 120
  121 QPENYIEVEG KDTPADAVLE RTYMPKVASF EQEIMEEMGI KEERTPKPTF WY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.0
Match:	1vsaS
Description:	No description for 1vsaS was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits