YRC Public Data Repository - Protein Structure Prediction

Protein:	CE11420
Organism:	Caenorhabditis elegans
Length:	278 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE11420.

Description	E-value	Query Range	Subject Range
RM24_CAEBR - Probable 39S ribosomal protein L24, mitochondrial OS=Caenorhabditis briggsae GN=mrpl-24 PE=3 SV=1 gi\|157747279 - gi\|157747279\|ref\|XP_001668734.1\| Hypothetical protein CBG12482 [Caenorhabditis briggsae AF16]	357.0	[0..1]	[278..1]
mRpL24-PA - The gene mitochondrial ribosomal protein L24 is referred to in FlyBase by the symbol Dmel\mRpL24 (CG...	232.0	[0..22]	[278..16]
RM24_DROPS - Probable 39S ribosomal protein L24, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=mRpL2... RM24_DROPS - Probable 39S ribosomal protein L24, mitochondrial precursor - Drosophila pseudoobscura (Fruit fly)	231.0	[0..22]	[278..16]
gi\|58389458, gi\|... - gi\|58389458\|ref\|XP_317046.2\| AGAP008405-PA [Anopheles gambiae str. PEST], gi\|55237285\|gb\|EAA12224.2\|... AGAP008405-PA - mRpL24: 39S ribosomal protein L24, mitochondrial\|protein_coding\|3R:10362610:10363448:-1\|gene:AGAP008...	219.0	[0..22]	[278..19]
gi\|114560324, gi... - gi\|114560326\|ref\|XP_001166859.1\| PREDICTED: mitochondrial ribosomal protein L24 isoform 3 [Pan trogl... MRPL24 - mitochondrial ribosomal protein L24	210.0	[0..71]	[278..18]
gi\|12843464 - gi\|12843464\|dbj\|BAB25991.1\| unnamed protein product [Mus musculus]	209.0	[0..72]	[278..19]
RM24_RAT - 39S ribosomal protein L24, mitochondrial OS=Rattus norvegicus GN=Mrpl24 PE=2 SV=1	208.0	[0..71]	[278..18]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTSRALRIP RKPFVDLDYA RHMPSAYVER TKRTVPRKVF GDRFGAPDIK MYYVHPDDYV  60
   61 PSHRRPWEDK QISSHLHRSD KYFSAQLSNQ YFNLRRPKSE RMADTE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [107-278]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WTFFPGDLVQ VMVGKDKGRQ GLVLTTSRDS SDVIVDGLHT KLGEDMEGSE KLGVDKTLRW  60
   61 QEQPLSVSKK QVMLVDPNDE QPCEARWQLN GPGDEYIRVS TRSGYEIPIP SQAKVTYEYL 120
  121 QPENYIEVEG KDTPADAVLE RTYMPKVASF EQEIMEEMGI KEERTPKPTF WY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.0
Match:	1vsaS
Description:	No description for 1vsaS was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits