| Protein: | letm-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 784 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for letm-1.
| Description | E-value | Query Range |
Subject Range |
|
|
255.0 | [0..14] | [368..54] |
|
Region A: Residues: [1-178] |
1 11 21 31 41 51
| | | | | |
1 MSLRYASNAY HIGRYAQRLF ATGQRNRVFH QYIASTSLQT TSLRYASTDR SKVEYTLKML 60
61 REDVQKQDEE AQKVLSLMKS DKDVATVKPP LKDRIIHELK HYYHGFRLLA LETRVSAKYL 120
121 WTVLRGATLS RRERQQLVRT VSDLFRLVPF SFFIIVPFME LALPIFIKLF PGMLPSTF
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [179-279] |
1 11 21 31 41 51
| | | | | |
1 QESSKEEEKW RKQVKLRVEM AKFLQDTIEE IGLERKTRNK ESTRSLEFAL FIKKVRNEGG 60
61 YVSNEELLKF SKLFEDEITL DNLSMGQLRS LCRLMSINSL G
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [280-665] |
1 11 21 31 41 51
| | | | | |
1 SPEILRFQLN MKIRELKADD KQIAAEGGVD ALSSIDLQSA CRARGMRAIG VSEERLKEQL 60
61 VQWLELSLND KVPPALLLLS RTLYLPEEVS FPDRLKAIVQ NLPDGLAETT KQKLTEMEGG 120
121 QIDHKARIEL IRSIESAIAN EKKDEEKKKK AAEEALKSKE EAEKAKVQEK EKLVDVAAQA 180
181 IVHELKKDIY DAVASTSSTT EAKEPAAKPS EAKEEKKEDI TVDKKDLSHI EEIIVGGPIK 240
241 EAKHDILGLR EKVLEHKEDL MEINSLDGAF AETKIAKRLR HKLNSMIEDV DSMVDKLEDE 300
301 KRNIREMLID PTVENSVDLK KEREVRIQDV IDSLAKLKES KGEQADDGEQ RERIEALLKT 360
361 IDEDSDGIVD KQLVLEVIEL LEKHTD
|
| Detection Method: | |
| Confidence: | 15.221849 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [666-784] |
1 11 21 31 41 51
| | | | | |
1 VHVSAAQMAS MIGTLKKEDE VAGLTEEIRK VQSGNYQMPI LPTGPSSADA FNQPQGVYTA 60
61 SKQVPARSEQ EGVEQKQQVE NGPVGIPDVD TKVTSTLQQN SSKTSSSSTT KSTSDSKSA
|
| Detection Method: | |
| Confidence: | 3.69897 |
| Match: | 2i1jA |
| Description: | No description for 2i1jA was found. |
