YRC Public Data Repository - Protein Structure Prediction

Protein:	mei-2
Organism:	Caenorhabditis elegans
Length:	280 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mei-2.

Description	E-value	Query Range	Subject Range
CE18702 - status:Confirmed UniProt:Q9XTS1 protein_id:CAB16313.1	288.0	[0..12]	[276..439]
gi\|39583049, gi\|... - gi\|39583049\|emb\|CAE71828.1\| Hypothetical protein CBG18869 [Caenorhabditis briggsae], gi\|187024693\|em...	275.0	[0..12]	[276..448]
gi\|63146654, gi\|... - gi\|67078524\|ref\|NP_001019917.1\| katanin p80 (WD repeat containing) subunit B 1 [Rattus norvegicus], ...	263.0	[0..5]	[251..380]
gi\|26327487 - gi\|26327487\|dbj\|BAC27487.1\| unnamed protein product [Mus musculus]	261.0	[0..5]	[251..380]
gi\|109128755 - gi\|109128755\|ref\|XP_001100717.1\| PREDICTED: katanin p80 subunit B 1 [Macaca mulatta]	258.0	[0..5]	[251..511]
gi\|114662827, gi... - gi\|114662827\|ref\|XP_001149222.1\| PREDICTED: katanin p80 subunit B 1 isoform 5 [Pan troglodytes], gi\|...	257.0	[0..5]	[251..380]
gi\|61369279, gi\|... - gi\|61369279\|gb\|AAX43310.1\| katanin p80 subunit B 1 [synthetic construct], gi\|61369270\|gb\|AAX43309.1\|...	257.0	[0..5]	[251..380]

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Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGLDDRKKL THAKNRKPLN DIPKSAENRP NTRSTSSRRG AEKDVPITFI GSSRTVKADL  60
   61 PEFTNTRSRR PLHSESKKEL SRNPVSRGEE HSSSLPKS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [99-280]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPESSVSVMS SNASLWSACT EEVNKIGVCA KRESRNLRVY KMKSFTSNME QILSNDNQLA  60
   61 PTVIRILNSR NSWCLNSCHA CLTFIMENIT SDNYGKRSAC LKALASITNS LLDTIIGFAS 120
  121 TKTRRIGVDV VAEERAAKAT ECIHNFRKIV KNRDKIYKQI DQETIYKLDA ILERLKKVSS 180
  181 HK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits