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View Structure Prediction Details

Protein: mei-2
Organism: Caenorhabditis elegans
Length: 280 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mei-2.

Description E-value Query
Range
Subject
Range
CE18702 - status:Confirmed UniProt:Q9XTS1 protein_id:CAB16313.1
288.0 [0..12] [276..439]
gi|39583049, gi|... - gi|39583049|emb|CAE71828.1| Hypothetical protein CBG18869 [Caenorhabditis briggsae], gi|187024693|em...
275.0 [0..12] [276..448]
gi|63146654, gi|... - gi|67078524|ref|NP_001019917.1| katanin p80 (WD repeat containing) subunit B 1 [Rattus norvegicus], ...
263.0 [0..5] [251..380]
gi|26327487 - gi|26327487|dbj|BAC27487.1| unnamed protein product [Mus musculus]
261.0 [0..5] [251..380]
gi|109128755 - gi|109128755|ref|XP_001100717.1| PREDICTED: katanin p80 subunit B 1 [Macaca mulatta]
258.0 [0..5] [251..511]
gi|114662827, gi... - gi|114662827|ref|XP_001149222.1| PREDICTED: katanin p80 subunit B 1 isoform 5 [Pan troglodytes], gi|...
257.0 [0..5] [251..380]
gi|61369279, gi|... - gi|61369279|gb|AAX43310.1| katanin p80 subunit B 1 [synthetic construct], gi|61369270|gb|AAX43309.1|...
257.0 [0..5] [251..380]

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Predicted Domain #1
Region A:
Residues: [1-98]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGLDDRKKL THAKNRKPLN DIPKSAENRP NTRSTSSRRG AEKDVPITFI GSSRTVKADL  60
   61 PEFTNTRSRR PLHSESKKEL SRNPVSRGEE HSSSLPKS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.335 N/A N/A g.44.1 RING/U-box

Predicted Domain #2
Region A:
Residues: [99-280]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPESSVSVMS SNASLWSACT EEVNKIGVCA KRESRNLRVY KMKSFTSNME QILSNDNQLA  60
   61 PTVIRILNSR NSWCLNSCHA CLTFIMENIT SDNYGKRSAC LKALASITNS LLDTIIGFAS 120
  121 TKTRRIGVDV VAEERAAKAT ECIHNFRKIV KNRDKIYKQI DQETIYKLDA ILERLKKVSS 180
  181 HK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle