| Protein: | klf-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 497 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for klf-1.
| Description | E-value | Query Range |
Subject Range |
|
|
619.0 | [0..2] | [496..2388] |
|
Region A: Residues: [1-109] |
1 11 21 31 41 51
| | | | | |
1 MTSSSINATS SREPLIHIPN KPSLSIDPLA RADRSVHLSP SFFQPGLSSI SSENDDAEQR 60
61 IHEATRSFNQ FGHQFYESIR ELSESTSAYE RLKANALRRK LENTFGNDS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [110-237] |
1 11 21 31 41 51
| | | | | |
1 GAATSSSSSS VFERQSDFSA FAPYKNSHFD STQSLFQPTT SFNDRLEQIK SDFIAEHQKS 60
61 MSSFSGFNTP TTALGAAFQG MQVKKSAFAP VLLRENLDTR RPGGHLISDI LNRDPLPQSR 120
121 NLNLNMAR
|
| Detection Method: | |
| Confidence: | 7.39794 |
| Match: | 1x6hA |
| Description: | Solution structures of the C2H2 type zinc finger domain of human Transcriptional repressor CTCF |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.61993443866178 | bayes_pls_golite062009 |
| nucleic acid binding | 0.731952128233945 | bayes_pls_golite062009 |
| catalytic activity | 0.616333600617445 | bayes_pls_golite062009 |
| DNA binding | 0.535555864236874 | bayes_pls_golite062009 |
| protein binding | 0.493759671494013 | bayes_pls_golite062009 |
| transcription regulator activity | 0.388095816166232 | bayes_pls_golite062009 |
|
Region A: Residues: [238-418] |
1 11 21 31 41 51
| | | | | |
1 NVPIRLIHST SNFDIASSSS GDSGHQDHES IVVEDADMDS PTSPCVKRSA MNFDLRDEPL 60
61 TVNVESVSST SDLPSSVSSS VNSFVYQNFD PLEFKRKIDE LTASACLAVM PDANGQVDPM 120
121 AIKTQLDAIK KQMEEHQTHM AEASQRLHVD SSLEDSNCEP SPSSSYDASE PSVKRLHHCT 180
181 H
|
| Detection Method: | |
| Confidence: | 53.0 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
|
Region A: Residues: [419-497] |
1 11 21 31 41 51
| | | | | |
1 PNCGKVYTKS SHLKAHFRTH TGEKPYECSW DGCDWRFARS DELTRHYRKH TGDRPFKCSQ 60
61 CSRAFSRSDH LSLHMKRHF
|
| Detection Method: | |
| Confidence: | 11.69897 |
| Match: | 1f2iG |
| Description: | ZIF268 |
Matching Structure (courtesy of the PDB): |
|
