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View Structure Prediction Details

Protein: CE11204
Organism: Caenorhabditis elegans
Length: 477 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE11204.

Description E-value Query
Range
Subject
Range
gi|187027547, gi... - gi|39598241|emb|CAE68933.1| Hypothetical protein CBG14913 [Caenorhabditis briggsae], gi|187027547|em...
gi|157745445 - gi|157745445|ref|XP_001667819.1| Hypothetical protein CBG14913 [Caenorhabditis briggsae AF16]
225.0 [0..1] [458..1]

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Predicted Domain #1
Region A:
Residues: [1-203]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEAILKLVL MFVMFSLTVI VGLSPLKVLH KLRHEAATAQ SSSKHKHVSL VLCLLTCFSG  60
   61 GVFLATCFLH LFPELRENLE TLDTVHNFRI DYPVGELLSC LGFFLIFFLE EVVIMIIPSF 120
  121 AHGHGHGHGH DHHHHETTPP LASKSVEASG AGGCCMADTV DEIKKKEDDL VVDETTALTK 180
  181 TTKRAISEEK EGDGHCQTHC PLT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [204-296]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VHERRGSNEC TANATHKKIV FKNRRYGRRI SRNQNRFSSY GSTLNGDLLF GENDDEEGSE  60
   61 CTFAPVAFAE PERCETNCEA IDEDPPILMK SRP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [297-477]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HAHSHGVRSI TFVLALGIHS IIEGLAFGVQ SGNDTIIALF LSLMVHKLIV AFSVGLQLFR  60
   61 THAHQIKWVI ISIFTLASMT PLGALIGLAV TSAADNALWK DLTITILQGL AVGTFIYVTF 120
  121 FEVLLHERDN EHPNLLKLLV MFIGFALIGA LRGFESSHGH SHSGSTEPHF HGNSSFDDYG 180
  181 H

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.1
Match: 2i68A
Description: No description for 2i68A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle