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View Structure Prediction Details

Protein: CE11204
Organism: Caenorhabditis elegans
Length: 477 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE11204.

Description E-value Query
Range
Subject
Range
gi|187027547, gi... - gi|39598241|emb|CAE68933.1| Hypothetical protein CBG14913 [Caenorhabditis briggsae], gi|187027547|em...
gi|157745445 - gi|157745445|ref|XP_001667819.1| Hypothetical protein CBG14913 [Caenorhabditis briggsae AF16]
225.0 [0..1] [458..1]

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Predicted Domain #1
Region A:
Residues: [1-203]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEAILKLVL MFVMFSLTVI VGLSPLKVLH KLRHEAATAQ SSSKHKHVSL VLCLLTCFSG  60
   61 GVFLATCFLH LFPELRENLE TLDTVHNFRI DYPVGELLSC LGFFLIFFLE EVVIMIIPSF 120
  121 AHGHGHGHGH DHHHHETTPP LASKSVEASG AGGCCMADTV DEIKKKEDDL VVDETTALTK 180
  181 TTKRAISEEK EGDGHCQTHC PLT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [204-296]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VHERRGSNEC TANATHKKIV FKNRRYGRRI SRNQNRFSSY GSTLNGDLLF GENDDEEGSE  60
   61 CTFAPVAFAE PERCETNCEA IDEDPPILMK SRP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [297-477]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HAHSHGVRSI TFVLALGIHS IIEGLAFGVQ SGNDTIIALF LSLMVHKLIV AFSVGLQLFR  60
   61 THAHQIKWVI ISIFTLASMT PLGALIGLAV TSAADNALWK DLTITILQGL AVGTFIYVTF 120
  121 FEVLLHERDN EHPNLLKLLV MFIGFALIGA LRGFESSHGH SHSGSTEPHF HGNSSFDDYG 180
  181 H

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.1
Match: 2i68A
Description: No description for 2i68A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle