YRC Public Data Repository - Protein Structure Prediction

Protein:	dhs-2
Organism:	Caenorhabditis elegans
Length:	343 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dhs-2.

Description	E-value	Query Range	Subject Range
gi\|255313843 - gi\|255313843\|ref\|ZP_05355426.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|255516524 - gi\|255516524\|ref\|ZP_05384200.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|255649624 - gi\|255649624\|ref\|ZP_05396526.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|254974717 - gi\|254974717\|ref\|ZP_05271189.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|255092105 - gi\|255092105\|ref\|ZP_05321583.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile CI... gi\|90575404, gi\|... - gi\|90575404\|ref\|ZP_01231888.1\| hypothetical protein CdifQ_02001165 [Clostridium difficile QCD-32g58]...	274.0	[0..39]	[298..1]

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Predicted Domain #1

Region A:
Residues: [1-343]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGILYWILN LTVVESVFYL VVAFLLFLIG RHFIEKLQIN NLSKRAVFIT GCDSGFGRGL  60
   61 ALKCLEQGMP VFAGCLTEQG IESLSAEARK SIGNGRSLDA FLMDVTSDES VGEVAKRLEK 120
  121 KCEQYGGLHA VVNNAGITGK HIADDFLDIN EYLKVANINL WGPIRTTMAV KKLLKKARGR 180
  181 VVTVASICAR VGLPGLGPYS VSKYGVSAYC DVIRQELRPF GISVHVLEPG FFNTPLINRE 240
  241 KIDAEILEAW KHAPNEVKQE YGEKFFNDAR ESTHLFLNSV ASSQISLVVD AYFHAITSKH 300
  301 PRSRYQIGWD SILLFIPFSY LPTGLQDYIF AAAGLFLPKP ACR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	68.0
Match:	2p68A
Description:	No description for 2p68A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits