YRC Public Data Repository - Protein Structure Prediction

Protein:	CE11026
Organism:	Caenorhabditis elegans
Length:	98 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE11026.

Description	E-value	Query Range	Subject Range
gi\|115434764, gi... - gi\|115434764\|ref\|NP_001042140.1\| Os01g0170400 [Oryza sativa (japonica cultivar-group)], gi\|113531671...	113.0	[0..3]	[93..468]
gi\|16924038 - gi\|16924038\|gb\|AAL31650.1\|AC079179_5 Putative Tam3-like transposon protein [Oryza sativa] gi\|255679178, gi... - gi\|37530608\|ref\|NP_919606.1\| putative Tam3-like transposon protein [Oryza sativa (japonica cultivar-...	110.0	[0..3]	[93..614]
gi\|54300493 - gi\|54300493\|gb\|AAV32822.1\| transposase [Zea mays]	109.0	[0..4]	[89..534]

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Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLCASAEVEV FYDTDNNRKS DPAVFWQNPL NRSKFPLLSQ IANRYLTTPA SSAESERVFS  60
   61 GAGRVSTKLR RKMSTKSLSK SVFLQQNQKV LGFKIGLD

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Detection Method:	PSI-BLAST
Confidence:	14.0
Match:	2bw3A
Description:	Three-dimensional structure of the Hermes DNA transposase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits