YRC Public Data Repository - Protein Structure Prediction

Protein:	dhs-13
Organism:	Caenorhabditis elegans
Length:	257 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dhs-13.

Description	E-value	Query Range	Subject Range
FABG_THEMA - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Thermotoga maritima GN=fabG PE=3 SV=1 FABG_THEMA - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / D...	278.0	[0..8]	[254..2]
gi\|146296617, gi... - gi\|82501013\|ref\|ZP_00886394.1\| 3-oxoacyl-(acyl-carrier-protein) reductase [Caldicellulosiruptor sacc...	276.0	[0..9]	[255..4]
gi\|115250215, gi... - gi\|126698778\|ref\|YP_001087675.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile 6... gi\|255306086 - gi\|255306086\|ref\|ZP_05350258.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile AT... gi\|255100197 - gi\|255100197\|ref\|ZP_05329174.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC...	273.0	[0..8]	[256..3]
gi\|255313843 - gi\|255313843\|ref\|ZP_05355426.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|255516524 - gi\|255516524\|ref\|ZP_05384200.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|255649624 - gi\|255649624\|ref\|ZP_05396526.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|254974717 - gi\|254974717\|ref\|ZP_05271189.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|255092105 - gi\|255092105\|ref\|ZP_05321583.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile CI... gi\|90575404, gi\|... - gi\|90575404\|ref\|ZP_01231888.1\| hypothetical protein CdifQ_02001165 [Clostridium difficile QCD-32g58]...	272.0	[0..8]	[256..3]
gi\|18310052, gi\|... - gi\|18310052\|ref\|NP_561986.1\| 3-ketoacyl-(acyl-carrier-protein) reductase [Clostridium perfringens st...	272.0	[0..9]	[255..2]
gi\|168210762, gi... - gi\|170711222\|gb\|EDT23404.1\| 3-oxoacyl-(acyl-carrier-protein) reductase [Clostridium perfringens B st... gi\|110675446, gi... - gi\|110800799\|ref\|YP_695772.1\| 3-ketoacyl-(acyl-carrier-protein) reductase [Clostridium perfringens A... gi\|170660709, gi... - gi\|170660709\|gb\|EDT13392.1\| 3-oxoacyl- reductase [Clostridium perfringens E str. JGS1987], gi\|168207...	268.0	[0..9]	[255..2]
gi\|110803752, gi... - gi\|110803752\|ref\|YP_698460.1\| 3-ketoacyl-(acyl-carrier-protein) reductase [Clostridium perfringens S...	268.0	[0..9]	[255..2]
gi\|91184216, gi\|... - gi\|91217712\|ref\|ZP_01254669.1\| putative 3-oxoacyl-[acyl-carrier protein] reductase [Psychroflexus to...	267.0	[0..2]	[255..4]
gi\|20807919 - gi\|20807919\|ref\|NP_623090.1\| Dehydrogenase with different specificities (related to short-chain alco... gi\|20807919, gi\|... - gi\|20807919\|ref\|NP_623090.1\| dehydrogenase [Thermoanaerobacter tengcongensis MB4], gi\|20516487\|gb\|AA...	265.0	[0..12]	[255..6]
gi\|56380060, gi\|... - gi\|56420218\|ref\|YP_147536.1\| short chain dehydrogenase [Geobacillus kaustophilus HTA426], gi\|5638006...	263.0	[0..8]	[252..2]

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Predicted Domain #1

Region A:
Residues: [1-257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPATKFLT DRVALVTAST KGIGFAIAKQ LGAAGASVVV CSRKKENVDE AVAALRLENI  60
   61 DAHGTTAHVG NKSDRTKLID FTLDRFTKLD ILVSNAAVNP HYGDLMKVTD SQWDKLLDLN 120
  121 VKSAFELTKE AVPHLEASGR GNVVFVSSVA GYSPMNEIGA YSVMKTTLTG LSKSLALNLA 180
  181 RRNIRVNSIA PGIIQTDFSQ VLFSDESEKQ KWLSQIAQRR FGDPDECAEA VAFLVSDEAS 240
  241 YISGETIGIN GGMHARI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.522879
Match:	2p68A
Description:	No description for 2p68A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits