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View Structure Prediction Details

Protein: CE09935
Organism: Caenorhabditis elegans
Length: 693 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE09935.

Description E-value Query
Range
Subject
Range
CE30721 - status:Partially_confirmed UniProt:O76677 protein_id:AAC27089.3
699.0 [0..1] [680..1]

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Predicted Domain #1
Region A:
Residues: [1-175]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPQDPVYSQ NDPLLVGNSN RSQSSDPWKT IAKIATVVIG ILFVTSPIVF GVSGVAEKNK  60
   61 ESKHGSLANQ TSANNATEEN TPKNYSTSFT ETKKSIILNQ KTDGTVTEYA TFEYNVTSDE 120
  121 YSRLNNDGTK IQPWLVKNME RKVKFYYFKG FPVRKTEFIH KIKPNEDGLN CSDIP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [176-249]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDDELMILNP KFKTFFIGIY WNINMHDDKK QLIHLKIEIL QMQELVNHGG LAEFCPNSLE  60
   61 NCMDIPSNGS LQFE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [250-442]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPPFDKFFIG IKMLNNMTTN HTNLPKIDDM GSFNASGHWK LLRRYEEFDT QRQPIQLIPE  60
   61 SGKNYIKFTY DVINNVYSHN NADGSDVSPR ELQYIERIVH EGNNEAFIQP DYPEEVNGGH 120
  121 IHWMFRLKNN GKSVKKVVIK MAGVDDILKE NAGIIEACSN YYIVILSDNI RLFKTDVNDR 180
  181 KTVETFLIEV YWR

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 4.24
Match: 2g9gA
Description: No description for 2g9gA was found.

Predicted Domain #4
Region A:
Residues: [443-498]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESILSKAILH RKTCKLKTCS EDTPETSTAT TTVSEMSATP RSIGTTTPSN DTESHQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.39794
Match: 2f4mA
Description: The Mouse PNGase-HR23 Complex Reveals a Complete Remodulation of the Protein-Protein Interface Compared to its Yeast Orthologs
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [499-693]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVVSTQLLTW RQQHIALGPI SRENHVKFTY DVMRDMYSHT KPNGSSYVPY NVENIERVVD  60
   61 KRLNQVYLHR NDLTKYTYIS WVFDMTIDGK VVVKLTIKVS GMEKRASRGK LEICRIYGYE 120
  121 KCTAIPIDEG FTIEYPQFSV FKIEYYYNAL SDPKNNPDTI LFKTKLKEGL NVESLSVEVN 180
  181 WKPKGPLANQ TTLST

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 50.39794
Match: 2g9gA
Description: No description for 2g9gA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle