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View Structure Prediction Details

Protein: CE09935
Organism: Caenorhabditis elegans
Length: 693 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE09935.

Description E-value Query
Range
Subject
Range
CE30721 - status:Partially_confirmed UniProt:O76677 protein_id:AAC27089.3
699.0 [0..1] [680..1]

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Predicted Domain #1
Region A:
Residues: [1-175]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPQDPVYSQ NDPLLVGNSN RSQSSDPWKT IAKIATVVIG ILFVTSPIVF GVSGVAEKNK  60
   61 ESKHGSLANQ TSANNATEEN TPKNYSTSFT ETKKSIILNQ KTDGTVTEYA TFEYNVTSDE 120
  121 YSRLNNDGTK IQPWLVKNME RKVKFYYFKG FPVRKTEFIH KIKPNEDGLN CSDIP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [176-249]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDDELMILNP KFKTFFIGIY WNINMHDDKK QLIHLKIEIL QMQELVNHGG LAEFCPNSLE  60
   61 NCMDIPSNGS LQFE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [250-442]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPPFDKFFIG IKMLNNMTTN HTNLPKIDDM GSFNASGHWK LLRRYEEFDT QRQPIQLIPE  60
   61 SGKNYIKFTY DVINNVYSHN NADGSDVSPR ELQYIERIVH EGNNEAFIQP DYPEEVNGGH 120
  121 IHWMFRLKNN GKSVKKVVIK MAGVDDILKE NAGIIEACSN YYIVILSDNI RLFKTDVNDR 180
  181 KTVETFLIEV YWR

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 4.24
Match: 2g9gA
Description: No description for 2g9gA was found.

Predicted Domain #4
Region A:
Residues: [443-498]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESILSKAILH RKTCKLKTCS EDTPETSTAT TTVSEMSATP RSIGTTTPSN DTESHQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.39794
Match: 2f4mA
Description: The Mouse PNGase-HR23 Complex Reveals a Complete Remodulation of the Protein-Protein Interface Compared to its Yeast Orthologs
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [499-693]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVVSTQLLTW RQQHIALGPI SRENHVKFTY DVMRDMYSHT KPNGSSYVPY NVENIERVVD  60
   61 KRLNQVYLHR NDLTKYTYIS WVFDMTIDGK VVVKLTIKVS GMEKRASRGK LEICRIYGYE 120
  121 KCTAIPIDEG FTIEYPQFSV FKIEYYYNAL SDPKNNPDTI LFKTKLKEGL NVESLSVEVN 180
  181 WKPKGPLANQ TTLST

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 50.39794
Match: 2g9gA
Description: No description for 2g9gA was found.

YRC Informatics Platform - Version 3.0
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