YRC Public Data Repository - Protein Structure Prediction

Protein:	aps-1
Organism:	Caenorhabditis elegans
Length:	157 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for aps-1.

Description	E-value	Query Range	Subject Range
gi\|74007149 - gi\|74007149\|ref\|XP_854230.1\| PREDICTED: similar to Adapter-related protein complex 1 sigma 1B subuni...	198.0	[0..2]	[156..190]
gi\|108883712, gi... - gi\|157113049\|ref\|XP_001657742.1\| clathrin coat assembly protein ap19 [Aedes aegypti], gi\|108883712\|g...	184.0	[0..1]	[157..1]
gi\|91076680 - gi\|91076680\|ref\|XP_971073.1\| PREDICTED: similar to adaptin [Tribolium castaneum]	182.0	[0..1]	[157..1]
AP-1sigma-PA - The gene AP-1Ã?Ã? is referred to in FlyBase by the symbol Dmel\AP-1Ã?Ã? (CG5... gi\|198131944, gi... - gi\|198452468\|ref\|XP_001358788.2\| GA19188 [Drosophila pseudoobscura pseudoobscura], gi\|198131944\|gb\|E... gi\|220942688, gi... - gi\|220952930\|gb\|ACL89008.1\| AP-1sigma-PA [synthetic construct], gi\|220942688\|gb\|ACL83887.1\| AP-1sigm... gi\|194102421, gi... - gi\|195144988\|ref\|XP_002013478.1\| GL23383 [Drosophila persimilis], gi\|194102421\|gb\|EDW24464.1\| GL2338...	182.0	[0..1]	[157..1]
gi\|89042891 - gi\|89042891\|ref\|XP_944818.1\| PREDICTED: similar to adaptor-related protein complex 1 sigma 2 subunit...	182.0	[0..2]	[148..48]
gi\|27924367 - gi\|27924367\|gb\|AAH45095.1\| Ap1s1 protein [Xenopus laevis]	181.0	[0..2]	[156..22]
gi\|31209177, gi\|... - gi\|31209177\|ref\|XP_313555.1\| ENSANGP00000023452 [Anopheles gambiae str. PEST], gi\|30176736\|gb\|EAA445...	181.0	[0..2]	[157..1]
gi\|87248449, gi\|... - gi\|87248449\|gb\|ABD36277.1\| adaptin [Bombyx mori], gi\|114052214\|ref\|NP_001040229.1\| adaptin [Bombyx m...	180.0	[0..1]	[157..1]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMQYMLLFSR QGKLRLQKWY TAYPDKQKKK ICRELITQIL ARKPKMCAFL EYKDLKVVYK  60
   61 RYASLYFCCA IEQNDNELIT LEVIHRYVEL LDKYFGSVCE LDIIFNFEKA YFILDEFLLA 120
  121 GEIQETSKKQ VLKAIAAQDL IQEEETPQGF FEDHGLG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.39794
Match:	1w63Q
Description:	AP1 clathrin adaptor core
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits