YRC Public Data Repository - Protein Structure Prediction

Protein:	rab-5
Organism:	Caenorhabditis elegans
Length:	208 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rab-5.

Description	E-value	Query Range	Subject Range
gi\|1370166 - gi\|1370166\|emb\|CAA98160.1\| RAB1C [Lotus japonicus]	216.0	[0..13]	[207..2]
gi\|303734, gi\|738942 - gi\|738942\|prf\|\|2001457K GTP-binding protein, gi\|303734\|dbj\|BAA02118.1\| GTP-binding protein [Pisum sa... gi\|1098293, gi\|4... - pir\|\|S41430 GTP-binding protein, ras-like (clone vfa-ypt1) - fava bean, gi\|452359\|emb\|CAA82707.1\| g...	216.0	[0..13]	[207..2]
gi\|4586580 - gi\|4586580\|dbj\|BAA76422.1\| rab-type small GTP-binding protein [Cicer arietinum]	214.0	[0..13]	[207..2]
gi\|1616614 - gi\|1616614\|emb\|CAA69701.1\| small GTP-binding protein [Nicotiana plumbaginifolia]	213.0	[0..13]	[207..2]
gi\|1053063 - gi\|1053063\|gb\|AAA80678.1\| small GTP-binding protein	213.0	[0..13]	[207..2]
ARA5_ARATH - Ras-related protein ARA-5 - Arabidopsis thaliana (Mouse-ear cress)	213.0	[0..4]	[207..48]
gi\|1381678 - gi\|1381678\|gb\|AAB97115.1\| small GTP-binding protein [Glycine max]	212.0	[0..13]	[207..2]
gi\|7643790 - gi\|7643790\|gb\|AAF65510.1\| small GTP-binding protein [Capsicum annuum]	212.0	[0..13]	[207..2]
RIC1_ORYSA - (P40392) Ras-related protein RIC1	212.0	[0..13]	[207..2]

Back

Predicted Domain #1

Region A:
Residues: [1-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAARNAGTAR PGGPNRTCQF KLVLLGESAV GKSSLVLRFV KGQFHEYQES TIGAAFLTQT  60
   61 VCLDDATIKF EIWDTAGQER YHSLAPMYYR GAQAAIVVYD ITNQESFQKA KNWVKELQRQ 120
  121 ASPNIVMALA GNKADVANKR TVEYEEANAY AEDNALLFME TSAKTSMNVN DIFMAIAKKL 180
  181 PIGPAQGEPT GTVDMNQPQQ QQKGSCCK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.69897
Match:	2heiA
Description:	No description for 2heiA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits