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View Structure Prediction Details

Protein: bra-2
Organism: Caenorhabditis elegans
Length: 214 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for bra-2.

Description E-value Query
Range
Subject
Range
gi|73949136 - gi|73949136|ref|XP_858849.1| PREDICTED: similar to BS69 protein beta isoform isoform 4 [Canis famili...
191.0 [0..13] [189..471]
gi|114629049 - gi|114629049|ref|XP_001135863.1| PREDICTED: zinc finger, MYND domain containing 11 isoform 5 [Pan tr...
189.0 [0..18] [189..400]
ZMYND11 - zinc finger, MYND domain containing 11
185.0 [0..18] [189..377]
gi|157776950 - gi|157776950|ref|XP_001666541.1| hypothetical protein CBG15170 [Caenorhabditis briggsae AF16]
gi|187027366, gi... - gi|39586064|emb|CAE69140.1| Hypothetical protein CBG15170 [Caenorhabditis briggsae], gi|187027366|em...
185.0 [0..1] [189..1]
gi|109088000 - gi|109088000|ref|XP_001100057.1| PREDICTED: zinc finger, MYND domain containing 11 isoform 5 [Macaca...
184.0 [0..18] [189..417]

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Predicted Domain #1
Region A:
Residues: [1-149]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADGQVHDEL MMDQQQQQGV VPQQGDIHLS PIDKDLGDAA LENNVRQYHL DGVVVSEGMK  60
   61 RMIIDLQRHW LSEYHASREK CLVELTEKLH QEFMMDQQKI RSELLQQFKD ELEQTRADLE 120
  121 NKHRENLKME SAKLNEKHKR ELVASRKKQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [150-214]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WCWSCDNEAI YHCCWNTAYC SVECQQGHWQ THRKFCRRKK GNNAPGAPSV PAPQQVGAPM  60
   61 PPQQQ

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.41
Match: 2d8qA
Description: No description for 2d8qA was found.

Predicted functions:

Term Confidence Notes
binding 0.704248066961418 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle