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View Structure Prediction Details

Protein: bra-2
Organism: Caenorhabditis elegans
Length: 214 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for bra-2.

Description E-value Query
Range
Subject
Range
gi|73949136 - gi|73949136|ref|XP_858849.1| PREDICTED: similar to BS69 protein beta isoform isoform 4 [Canis famili...
191.0 [0..13] [189..471]
gi|114629049 - gi|114629049|ref|XP_001135863.1| PREDICTED: zinc finger, MYND domain containing 11 isoform 5 [Pan tr...
189.0 [0..18] [189..400]
ZMYND11 - zinc finger, MYND domain containing 11
185.0 [0..18] [189..377]
gi|157776950 - gi|157776950|ref|XP_001666541.1| hypothetical protein CBG15170 [Caenorhabditis briggsae AF16]
gi|187027366, gi... - gi|39586064|emb|CAE69140.1| Hypothetical protein CBG15170 [Caenorhabditis briggsae], gi|187027366|em...
185.0 [0..1] [189..1]
gi|109088000 - gi|109088000|ref|XP_001100057.1| PREDICTED: zinc finger, MYND domain containing 11 isoform 5 [Macaca...
184.0 [0..18] [189..417]

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Predicted Domain #1
Region A:
Residues: [1-149]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADGQVHDEL MMDQQQQQGV VPQQGDIHLS PIDKDLGDAA LENNVRQYHL DGVVVSEGMK  60
   61 RMIIDLQRHW LSEYHASREK CLVELTEKLH QEFMMDQQKI RSELLQQFKD ELEQTRADLE 120
  121 NKHRENLKME SAKLNEKHKR ELVASRKKQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [150-214]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WCWSCDNEAI YHCCWNTAYC SVECQQGHWQ THRKFCRRKK GNNAPGAPSV PAPQQVGAPM  60
   61 PPQQQ

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.41
Match: 2d8qA
Description: No description for 2d8qA was found.

Predicted functions:

Term Confidence Notes
binding 0.704248066961418 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle