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View Structure Prediction Details

Protein: mec-10
Organism: Caenorhabditis elegans
Length: 724 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mec-10.

Description E-value Query
Range
Subject
Range
gi|39583833 - gi|39583833|emb|CAE74906.1| Hypothetical protein CBG22775 [Caenorhabditis briggsae]
gi|157771466 - gi|157771466|ref|XP_001677553.1| Hypothetical protein CBG22775 [Caenorhabditis briggsae AF16]
600.0 [0..4] [724..1]

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Predicted Domain #1
Region A:
Residues: [1-85]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRNPRMSKF QPNPRSRSRF QDETDLRSLR SFKTDFSNYL ASDTNFLNVA EIMTSYAYGE  60
   61 SNNAHEKEIQ CDLLTENGGI EIDPT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [86-268]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RLSYRERIRW HLQQFCYKTS SHGIPMLGQA PNSLYRAAWV FLLLICAIQF INQAVAVIQK  60
   61 YQKMDKITDI QLKFDTAPFP AITLCNLNPY KDSVIRSHDS ISKILGVFKS VMKKAGDSSS 120
  121 EALEEEEETE YDMNGITIQA KRKKRGAGEK GTFEPANSAC ECDEEDGSNE CEERSTEKPS 180
  181 GDN

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.8
Match: 2qtsA
Description: No description for 2qtsA was found.

Predicted Domain #3
Region A:
Residues: [269-724]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DMCICAFDRQ TNDAWPCHRK EQWTNTTCQT CDEHYLCSKK AKKGTKRSEL KKEPCICESK  60
   61 GLFCIKHEHA AMVLNLWEYF GDSEDFSEIS TEEREALGFG NMTDEVAIVT KAKENIIFAM 120
  121 SALSEEQRIL MSQAKHNLIH KCSFNGKPCD IDQDFELVAD PTFGNCFVFN HDREIFKSSV 180
  181 RAGPQYGLRV MLFVNASDYL PTSEAVGIRL TIHDKDDFPF PDTFGYSAPT GYISSFGMRM 240
  241 KKMSRLPAPY GDCVEDGATS NYIYKGYAYS TEGCYRTCFQ ELIIDRCGCS DPRFPSIGGV 300
  301 QPCQVFNKNH RECLEKHTHQ IGEIHGSFKC RCQQPCNQTI YTTSYSEAIW PSQALNISLG 360
  361 QCEKEAEECN EEYKENAAML EVFYEALNFE VLSESEAYGI VKMMADFGGH LGLWSGVSVM 420
  421 TCCEFVCLAF ELIYMAIAHH INQQRIRRRE NAANEY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 82.69897
Match: 2qtsA
Description: No description for 2qtsA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle