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View Structure Prediction Details

Protein: nas-9
Organism: Caenorhabditis elegans
Length: 517 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nas-9.

Description E-value Query
Range
Subject
Range
nas-9 - status:Confirmed UniProt:P91137 protein_id:AAL16314.1
646.0 [0..1] [517..1]

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Predicted Domain #1
Region A:
Residues: [1-110]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFLLFVVFP FVYAQLLPEL LAGFQNGRFR GGPDGFNRGP GGFHRGPDGF GGDPRGGVDL  60
   61 GHLIGNIAAN VGQEMGLNDA DVIGDLRGIS RGPRPSSMEW GRRARHFCRR 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [111-301]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YPGHPKCQRG QLPQFTDVPT IINTIIYNAG DLLPRVPTLN IHDPLAGLNS ELVGFIKSLQ  60
   61 SQFGQLSSQQ RNEIHDSCRS FKCDQQSPQN TQAKQELLTK MLAFDQAVGG KAAPAHDKVN 120
  121 LRFDRTQQVK QALLKRANLS HIIVPADNGV FDRDVLLTEH QANFLLNELG EAGRGADVGA 180
  181 GGGGGGRVPR S

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.16
Match: 2ch7B
Description: No description for 2ch7B was found.

Predicted Domain #3
Region A:
Residues: [302-517]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVFFQESAVQ KWDIWKPIQY TLDDSLEESD KKDIRDALHE ISINTCILFR YNATPKGYHL  60
   61 NYMKVDSTTF CGLSYVGRTD PANPIYLSFQ CGDIDWSNID PQHYDTFAIS DAKLYTSYGT 120
  121 KYAYDSIMHY NAYLGAKDPN KPTMIPLVNP QENTPKLGQR AKLTRGDIRL LKKMYCRPGC 180
  181 DDQNVHCGTW ALHGYCKMKE QMKWMNENCK ASCDKC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 38.522879
Match: 1astA
Description: STRUCTURE OF ASTACIN AND IMPLICATIONS FOR ACTIVATION OF ASTACINS AND ZINC-LIGATION OF COLLAGENASES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.448845530777411 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle