YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: nas-9
Organism: Caenorhabditis elegans
Length: 517 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nas-9.

Description E-value Query
Range
Subject
Range
nas-9 - status:Confirmed UniProt:P91137 protein_id:AAL16314.1
646.0 [0..1] [517..1]

Back

Predicted Domain #1
Region A:
Residues: [1-110]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFLLFVVFP FVYAQLLPEL LAGFQNGRFR GGPDGFNRGP GGFHRGPDGF GGDPRGGVDL  60
   61 GHLIGNIAAN VGQEMGLNDA DVIGDLRGIS RGPRPSSMEW GRRARHFCRR 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [111-301]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YPGHPKCQRG QLPQFTDVPT IINTIIYNAG DLLPRVPTLN IHDPLAGLNS ELVGFIKSLQ  60
   61 SQFGQLSSQQ RNEIHDSCRS FKCDQQSPQN TQAKQELLTK MLAFDQAVGG KAAPAHDKVN 120
  121 LRFDRTQQVK QALLKRANLS HIIVPADNGV FDRDVLLTEH QANFLLNELG EAGRGADVGA 180
  181 GGGGGGRVPR S

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.16
Match: 2ch7B
Description: No description for 2ch7B was found.

Predicted Domain #3
Region A:
Residues: [302-517]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVFFQESAVQ KWDIWKPIQY TLDDSLEESD KKDIRDALHE ISINTCILFR YNATPKGYHL  60
   61 NYMKVDSTTF CGLSYVGRTD PANPIYLSFQ CGDIDWSNID PQHYDTFAIS DAKLYTSYGT 120
  121 KYAYDSIMHY NAYLGAKDPN KPTMIPLVNP QENTPKLGQR AKLTRGDIRL LKKMYCRPGC 180
  181 DDQNVHCGTW ALHGYCKMKE QMKWMNENCK ASCDKC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 38.522879
Match: 1astA
Description: STRUCTURE OF ASTACIN AND IMPLICATIONS FOR ACTIVATION OF ASTACINS AND ZINC-LIGATION OF COLLAGENASES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.448845530777411 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle