| Protein: | obr-4 |
| Organism: | Caenorhabditis elegans |
| Length: | 676 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for obr-4.
| Description | E-value | Query Range |
Subject Range |
|
|
488.0 | [0..1] | [673..23] |
|
Region A: Residues: [1-107] |
1 11 21 31 41 51
| | | | | |
1 MEGPLSKWTN MVHGWQYRWF KIENDTLLYY TSREKMLKGQ QRGQIRLTGA VVGIDGENNS 60
61 LFTITVEGKT FHMQGRDLRE RNQWVRILEN SIRASSGYAK NVSVGTT
|
| Detection Method: |  |
| Confidence: | 15.39794 |
| Match: | 2d9xA |
| Description: | No description for 2d9xA was found. |
|
Region A: Residues: [108-268] |
1 11 21 31 41 51
| | | | | |
1 PSQHFKQRTE EANEFLKTLV EKVKALEQLK SGERAVDEKK TIDSLIAASN NLTNNVKHAI 60
61 IYLQMAQARL DPNMKTEKLM FTHPDLNEKP SSRETPGTVS DSTQTSTDKP ISGIQHLDHL 120
121 KPQRAESYAS SDEEEFYDAD EELIDLDNFE SEKSGQESGD S
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [269-676] |
1 11 21 31 41 51
| | | | | |
1 NRTSDAAIMS SDEDGYDFGD SNEDFDEIYN NAEEHDIGNV QQDHGSVLMH LLSQVSVGMD 60
61 LTKVTLPTFI LERRSLLEMY ADFFAHPDLF IATNGNDSAE KRMIAVVRYY LNSFYAARKS 120
121 GVAKKPYNAI LGETFRCRYS VPNSSLSGKK TESGPWPGSD EKQLTFIAEQ VSHHPPISAF 180
181 YAEMPSEGIS FNAHIYTKSS FLGLSIGVAS IGEGILTLHN YGDEQYTITF PSGYGRSIMS 240
241 TPWFEFGGKV KVECEKTGYR ADIEFLTKPF FGGKPHRIQG SICRDGAKKP VLTLRGEWNG 300
301 TMYAKTQNGE EYVFVDVKAK PEVKKECVPV MQQGKRESRR LWRHVTAALL RNRIQTATTS 360
361 KRFIEQRQRK EAKERLESGE KWTPLLFDTT DKDGEWMYKQ KFGVRKAV
|
| Detection Method: | |
| Confidence: | 71.221849 |
| Match: | 1zhtA |
| Description: | Structure of yeast oxysterol binding protein Osh4 in complex with 7-hydroxycholesterol |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| oxysterol binding | 5.62675037461468 | bayes_pls_golite062009 |
| sterol binding | 4.18891468109664 | bayes_pls_golite062009 |
| 3.02967613614595 | bayes_pls_golite062009 | |
| steroid binding | 2.54679035876403 | bayes_pls_golite062009 |
| binding | 2.53764463034371 | bayes_pls_golite062009 |
| phosphoinositide binding | 2.2725849852584 | bayes_pls_golite062009 |
| phospholipid binding | 2.08170907241909 | bayes_pls_golite062009 |
| lipid binding | 1.8520231230392 | bayes_pls_golite062009 |
| phosphatidylinositol-4,5-bisphosphate binding | 1.72950454023501 | bayes_pls_golite062009 |
| cholesterol binding | 0.644339278395346 | bayes_pls_golite062009 |
