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View Structure Prediction Details

Protein: CE08487
Organism: Caenorhabditis elegans
Length: 474 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE08487.

Description E-value Query
Range
Subject
Range
CE18209 - status:Partially_confirmed UniProt:O61929 protein_id:AAC17770.1
396.0 [0..1] [474..1]

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Predicted Domain #1
Region A:
Residues: [1-104]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNRNTAICL IALCFISFLF MFSRNTCNIQ EQYGISLLQL PFFSNSTESL KNISGLVSLQ  60
   61 PEYVEPLTPR PTPSKEEVPD SGDDEVVGGE SAMSYFKKLS GSIK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [105-215]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DFINSRSGSG EKINVLAAYS YKDHFSATIS IPKKIGTIAY CRYVGADGKE VAEPVLSQIY  60
   61 PFFVVYCSRR NNVTTLGITG DKNELISTEN SVKLIRRKFK EYQHNVSFCL A

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [216-344]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PIYGKEPKWL HFVELVEHYK LQGVNKFFIY IREINEYDRK LIDSYVESGE VEIIDIPGTV  60
   61 ADVIAQQLMA VADCLLRSRT FSKWSIYADI DERLIMTDDR ITIDGFLRTI TDETIGSIAF 120
  121 PQRWIMKRD

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.39
Match: 1h7lA
Description: Spore coat polysaccharide biosynthesis protein SpsA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transferase activity 0.117862115002202 bayes_pls_golite062009
catalytic activity 0.075405962065044 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.00643109218840909 bayes_pls_golite062009

Predicted Domain #4
Region A:
Residues: [345-474]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLPAKFENDE QVIETMPTRA WHETTSAALK GHPVCNEQQS CWAKDIVHNE KAIRMLVHEV  60
   61 ETFYPGFREL FLDPSIGYIR HYRDVTMQSW EHNNVANLKK FGPFSNTTYP PTIGSKLLKN 120
  121 VFSRLHRVYN 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle