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View Structure Prediction Details

Protein: CE08487
Organism: Caenorhabditis elegans
Length: 474 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE08487.

Description E-value Query
Range
Subject
Range
CE18209 - status:Partially_confirmed UniProt:O61929 protein_id:AAC17770.1
396.0 [0..1] [474..1]

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Predicted Domain #1
Region A:
Residues: [1-104]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNRNTAICL IALCFISFLF MFSRNTCNIQ EQYGISLLQL PFFSNSTESL KNISGLVSLQ  60
   61 PEYVEPLTPR PTPSKEEVPD SGDDEVVGGE SAMSYFKKLS GSIK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [105-215]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DFINSRSGSG EKINVLAAYS YKDHFSATIS IPKKIGTIAY CRYVGADGKE VAEPVLSQIY  60
   61 PFFVVYCSRR NNVTTLGITG DKNELISTEN SVKLIRRKFK EYQHNVSFCL A

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [216-344]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PIYGKEPKWL HFVELVEHYK LQGVNKFFIY IREINEYDRK LIDSYVESGE VEIIDIPGTV  60
   61 ADVIAQQLMA VADCLLRSRT FSKWSIYADI DERLIMTDDR ITIDGFLRTI TDETIGSIAF 120
  121 PQRWIMKRD

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.39
Match: 1h7lA
Description: Spore coat polysaccharide biosynthesis protein SpsA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transferase activity 0.117862115002202 bayes_pls_golite062009
catalytic activity 0.075405962065044 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.00643109218840909 bayes_pls_golite062009

Predicted Domain #4
Region A:
Residues: [345-474]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLPAKFENDE QVIETMPTRA WHETTSAALK GHPVCNEQQS CWAKDIVHNE KAIRMLVHEV  60
   61 ETFYPGFREL FLDPSIGYIR HYRDVTMQSW EHNNVANLKK FGPFSNTTYP PTIGSKLLKN 120
  121 VFSRLHRVYN 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle