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View Structure Prediction Details

Protein: CE08453
Organism: Caenorhabditis elegans
Length: 226 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE08453.

Description E-value Query
Range		 Subject
Range
CE00571 - status:Confirmed UniProt:Q20218 protein_id:CAA82940.1
 270.0 [0..14] [215..23]
gi|68402960 - gi|68402960|ref|XP_695548.1| PREDICTED: similar to CREB-binding protein [Danio rerio]
 195.0 [0..14] [211..363]
gi|39590738, gi|... - gi|39590738|emb|CAE65110.1| Hypothetical protein CBG09974 [Caenorhabditis briggsae], gi|187031431|em...
gi|157774347 - gi|157774347|ref|XP_001665239.1| hypothetical protein CBG09974 [Caenorhabditis briggsae AF16]
 181.0 [0..92] [222..568]
gi|547239 - gi|547239|gb|AAB31182.1| p300=transcription coactivator {N-terminal} [mice, Peptide Partial, 688 aa]
 168.0 [0..4] [106..338]
gi|50755982 - gi|50755982|ref|XP_414964.1| PREDICTED: similar to CREB-binding protein [Gallus gallus]
 166.0 [0..104] [203..867]

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Predicted Domain #1
Region A:
Residues: [1-111] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTLISRQLG LLLHAHECVR RDIKIREAAE KNEPAPHAMC KIQDCVIMKE VLKHMTSCKE  60
   61 GPKCNSVHCA SSRTILSHWK KCFNEECPVC KPIIEQRTAP PQDTTPAEPK K

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.154902
Match: 1l3eB
Description: CREB-binding transcriptional adaptor protein CBP (p300)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.295152393103135 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [112-226] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEHDQIWHLE VPKTYRSELI EKIYKGIMSN VKPGTLSEAQ MDTWKEYSRS AELQIFDTAQ  60
   61 KLEAYYHMAR EKVCRYQEGF PRRQKTEEKD ESDGSEKEDE ADDRLEGTST DYQGS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.39794
Match: 1sb0A
Description: Solution structure of the KIX domain of CBP bound to the transactivation domain of c-Myb
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle