YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: dcp-66
Organism: Caenorhabditis elegans
Length: 681 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dcp-66.

Description E-value Query
Range
Subject
Range
dcp-66 - status:Partially_confirmed UniProt:Q8I0T2 protein_id:CAD56589.1
330.0 [0..1] [681..1]

Back

Predicted Domain #1
Region A:
Residues: [1-160]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQVQQVPSS PMNGIPEKNG NGLSIEESAS TAVAALAHIQ NGAVLFHGTP TKDLNGASTS  60
   61 IDTDDLQLSP SDLRRRSTRA SALKAQEKIK LKDDIVQGPQ KRANDDDDME DEELGDEINE 120
  121 QSAPKKRRLE NGKEFDQTCF RFGLRANNEG EVYAMTDESE 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [161-377]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSSIHESEME VVRYHYEKMK NKEPDEEQLR ERLNMRREAE NQLREEEAKL LVLRKMKDSQ  60
   61 TRAITKLAAE TKAADLAEAT SAAYKPAVAT NGKSVTNGKN SMIESNNKTM NGLKNLSIPQ 120
  121 QLELLQKLSS QSPAAKQAYI MAKKNPAQTT QLFQQLITIN NQNLQKQKEL SAAETNASAS 180
  181 ASPAVQQSQQ AQQPQQAQIT QSKLLNQQTP AQRIQAA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.221849
Match: 1m2vB
Description: Sec24
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [378-512]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RLAFRAQADK QLTTIPTQKS QPHDITFLPN PNASAFLALH GLDLVVQHVL KDRSNETPYA  60
   61 GPSYECEECK TECAHTWKAI GSTQDDLHLY CENCVRSAQK RKNRTDQTAL LKRAFQKITA 120
  121 QEKEFEKKIA EGQLE

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.94
Match: 1jocA
Description: Eea1; Eea1 homodimerisation domain
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [513-681]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QYAEAKAAAP ATSQTIPTSS TATVSSIPLV PRLPQIPSST GSSTPTQAVK TSTPIHSTPK  60
   61 SSSSSAKKTA AQLQQQSMQG MNQLFSTAML RNNPQMQQML QMYQALAMGG GAANMANNQM 120
  121 AMLFQAQAMQ AAQAQVARAQ AAKAQAAQAQ AAQLKPRHRQ IERRINNQC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle