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View Structure Prediction Details

Protein: dcp-66
Organism: Caenorhabditis elegans
Length: 681 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dcp-66.

Description E-value Query
Range
Subject
Range
dcp-66 - status:Partially_confirmed UniProt:Q8I0T2 protein_id:CAD56589.1
330.0 [0..1] [681..1]

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Predicted Domain #1
Region A:
Residues: [1-160]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQVQQVPSS PMNGIPEKNG NGLSIEESAS TAVAALAHIQ NGAVLFHGTP TKDLNGASTS  60
   61 IDTDDLQLSP SDLRRRSTRA SALKAQEKIK LKDDIVQGPQ KRANDDDDME DEELGDEINE 120
  121 QSAPKKRRLE NGKEFDQTCF RFGLRANNEG EVYAMTDESE 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [161-377]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSSIHESEME VVRYHYEKMK NKEPDEEQLR ERLNMRREAE NQLREEEAKL LVLRKMKDSQ  60
   61 TRAITKLAAE TKAADLAEAT SAAYKPAVAT NGKSVTNGKN SMIESNNKTM NGLKNLSIPQ 120
  121 QLELLQKLSS QSPAAKQAYI MAKKNPAQTT QLFQQLITIN NQNLQKQKEL SAAETNASAS 180
  181 ASPAVQQSQQ AQQPQQAQIT QSKLLNQQTP AQRIQAA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.221849
Match: 1m2vB
Description: Sec24
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [378-512]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RLAFRAQADK QLTTIPTQKS QPHDITFLPN PNASAFLALH GLDLVVQHVL KDRSNETPYA  60
   61 GPSYECEECK TECAHTWKAI GSTQDDLHLY CENCVRSAQK RKNRTDQTAL LKRAFQKITA 120
  121 QEKEFEKKIA EGQLE

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.94
Match: 1jocA
Description: Eea1; Eea1 homodimerisation domain
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [513-681]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QYAEAKAAAP ATSQTIPTSS TATVSSIPLV PRLPQIPSST GSSTPTQAVK TSTPIHSTPK  60
   61 SSSSSAKKTA AQLQQQSMQG MNQLFSTAML RNNPQMQQML QMYQALAMGG GAANMANNQM 120
  121 AMLFQAQAMQ AAQAQVARAQ AAKAQAAQAQ AAQLKPRHRQ IERRINNQC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle