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View Structure Prediction Details

Protein: CE08370
Organism: Caenorhabditis elegans
Length: 316 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE08370.

Description E-value Query
Range		 Subject
Range
gi|159131702 - gi|159131702|gb|EDP56815.1| fatty acid hydroxylase, putative [Aspergillus fumigatus A1163]
gi|70996386, gi|... - gi|70996386|ref|XP_752948.1| fatty acid hydroxylase [Aspergillus fumigatus Af293], gi|66850583|gb|EA...
 153.0 [0..4] [315..152]

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Predicted Domain #1
Region A:
Residues: [1-92] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIGADEKKP LLVQLDGQYY DIADFAPKHP GGAKVLNRLA GEEIGEFIRG EKRIMGVRHE  60
   61 HSEAAYNMLE RYNVNAIQKG DPLIESKSGM LF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.045757
Match: 1awpA
Description: Cytochrome b5
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water 2.29500061324594 bayes_pls_golite062009
sphingosine hydroxylase activity 2.09152903381389 bayes_pls_golite062009
binding 1.13937274704645 bayes_pls_golite062009
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen 1.05227276400356 bayes_pls_golite062009
cytochrome-c oxidase activity 0.973006556081137 bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors 0.973006556081137 bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor 0.973006556081137 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 0.888859895539844 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 0.808453086600089 bayes_pls_golite062009
electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity 0.754105021273961 bayes_pls_golite062009
heme-copper terminal oxidase activity 0.734823847983524 bayes_pls_golite062009
cation transmembrane transporter activity 0.602390039366203 bayes_pls_golite062009
oxidoreductase activity 0.583561246970036 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 0.493634303942328 bayes_pls_golite062009
protein binding 0.268795825133297 bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH 0.0873984825495362 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [93-316] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KVGSLGSEYW HWIHQPYDGT LRLFDSDVLE SMTRTAWWVV PAVWMPIVIT FSILSVLSFS  60
   61 TSTDVYNSIL LWSAWFVIGV LTWTLTEYSL HRWVFHWKPS PDSPNQILLH FLAHGLHHKT 120
  121 PMDGDRLVFP PVPATLIVGI FYLIYSNTFQ WPVFCAFGAG KLFGYVTYDM VHYYLHHGSP 180
  181 RPRSNLHFRK VYHHNHHFKN FDVGFGISTS LWDYVFHTLG MGPL

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 13.886057
Match: PF04116.4
Description: No description for PF04116.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle