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View Structure Prediction Details

Protein: CE08359
Organism: Caenorhabditis elegans
Length: 610 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE08359.

Description E-value Query
Range
Subject
Range
CE27729 - status:Partially_confirmed UniProt:Q95X82 protein_id:AAK68202.1
828.0 [0..1] [610..1]

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Predicted Domain #1
Region A:
Residues: [1-109]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDEHYNPRN RLKTQIKRRS SCRNILNAVP PPPPTDFEGL EGFTDSCPAP TANNPFKVSS  60
   61 PQKKRQKPQV TFSQDDPFAA SISRSPDPLK TPTKGVRSSP RKRKSPQKF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [110-268]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ERFQSFDPAL LQEFHPVDFS ALLATSSSAQ KPAEPAQESA EDLPTDLRIG SKMRIVSKVS  60
   61 FPWMNTRKST GNVIVKFQTN DRFDGMQYFN KTFLNGYEDP TVPLPVSPMS ILEAASLFYQ 120
  121 FPVIPGLKMY PRITAEQEYG GAHLQHLKFE FFCRNVSRV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [269-387]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLAPLVTSTM LEQWQECYAE LYSSYKKGQR GSFYVATAVC NVLFTKMPLS GGGDDVAADD  60
   61 TSQSCSQAFR GQKLVAVITH TTSAIREHLR SQGVDFEAPK PTSSLKRVSS SPQLHHDQS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [388-492]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLDCLLASES KENSQMGPTT FGGIENSENS DESPLKKDQD SDENESPMKL ANQWLNEIGV  60
   61 SPRTVKNTVS RELSSQVTDR AGFQCLVVHG SKIHALFNAL MDSDV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [493-610]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VHEKTGPYTK IPPTLIATSP FLYGQLLSLT KSSNIFAKAG TKCTEYELKL ENGPVLPHCA  60
   61 KMMTQFIRST NMCSTEEKPV TMQVMDRHTS QGMSDWTETA TNWNTVTIAE NCVKWTKN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle