YRC Public Data Repository - Protein Structure Prediction

Protein:	CE08170
Organism:	Caenorhabditis elegans
Length:	173 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE08170.

Description	E-value	Query Range	Subject Range
gi\|47214568 - gi\|47214568\|emb\|CAG13290.1\| unnamed protein product [Tetraodon nigroviridis]	97.0	[0..2]	[171..10273]
gi\|25508391 - pir\|\|E97944 zinc metalloproteinase [imported] - Streptococcus pneumoniae (strain R6) ZMPB_STRR6 - Zinc metalloprotease ZmpB OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=zmpB PE=3 SV=1 gi\|116076356, gi... - gi\|116515780\|ref\|YP_816076.1\| zinc metalloprotease ZmpB [Streptococcus pneumoniae D39], gi\|116076356...	94.0	[0..15]	[168..181]
GERIA_BACCE - Spore germination protein GerIA OS=Bacillus cereus GN=gerIA PE=3 SV=1 gi\|229193019, gi... - gi\|229193019\|ref\|ZP_04319975.1\| Spore germination protein gerIA [Bacillus cereus ATCC 10876], gi\|228...	91.0	[0..3]	[150..12]
gi\|23497111, gi\|... - gi\|23509269\|ref\|NP_701936.1\| hypothetical protein PF14_0048 [Plasmodium falciparum 3D7], gi\|23497111...	90.0	[0..9]	[162..734]
gi\|70878103 - gi\|70878103\|gb\|EAN91386.1\| trans-sialidase, putative [Trypanosoma cruzi] gi\|71648919 - gi\|71648919\|ref\|XP_813237.1\| trans-sialidase [Trypanosoma cruzi strain CL Brener]	88.0	[0..3]	[172..790]
gi\|22209012 - gi\|22209012\|gb\|AAC98688.2\| surface antigen PHGST#5 [Trypanosoma cruzi]	86.0	[0..3]	[172..472]
gi\|8163724 - gi\|8163724\|gb\|AAF73826.1\| surface protein PcpC [Streptococcus pneumoniae]	84.0	[0..3]	[172..327]

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Predicted Domain #1

Region A:
Residues: [1-173]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNKSKNTKK EGAEKKRSKT KTAKKKTSTL THSKSVTSTD PKEYEKEKRR DDKDVLRMTK  60
   61 EDVGKERKKE APKKEQSKDQ LVKEQPKEQP KEQPKEQPKE QPKDQAKDVV KDIAKPPLKE 120
  121 QPKEQPKEQP KKKEEEKTSK NMEISGMDMV MKDDGKKTKM DDGYEDFGPG AAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.3
Match:	2j63A
Description:	No description for 2j63A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits