Protein: | ham-2 |
Organism: | Caenorhabditis elegans |
Length: | 392 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ham-2.
Description | E-value | Query Range |
Subject Range |
|
508.0 | [0..3] | [349..2535] |
Region A: Residues: [1-159] |
1 11 21 31 41 51 | | | | | | 1 MPYRAELKRP DLKGSFPCSI CQKVFCHSSS LSRHRMQAHF KSYTCTTCNN EIPSNDTLRS 60 61 HMYRVHNITR MFMCRCCNWA FPDKTSLHIH MQSMLKNGTP GEAAVLAKSS DVVDSTSESG 120 121 SPRQSPPFSP DLLMQKRMLQ VAANNNNIGS IFPTLLKSP |
Detection Method: | |
Confidence: | 49.69897 |
Match: | 2i13A |
Description: | No description for 2i13A was found. |
Region A: Residues: [160-290] |
1 11 21 31 41 51 | | | | | | 1 DSKSMFPLDL SNMGPSQFLS AWLANNPINT AALNLAAQQT PSKDSIQSSN ISDYDDLEVQ 60 61 TTEEDIKFEV ESSDVSPRSV IVKTEPTFKR ELEHDADIDV EGDDGEPPLK MTIDDKNIHI 120 121 SHDQPSPTVS D |
Detection Method: | |
Confidence: | 15.522879 |
Match: | 2dlqA |
Description: | No description for 2dlqA was found. |
Term | Confidence | Notes |
binding | 1.7678140110688 | bayes_pls_golite062009 |
transcription regulator activity | 1.36521420117645 | bayes_pls_golite062009 |
DNA binding | 1.25676119489845 | bayes_pls_golite062009 |
nucleic acid binding | 1.23181967524688 | bayes_pls_golite062009 |
transcription factor activity | 0.48221167392496 | bayes_pls_golite062009 |
protein binding | 0.286371122239253 | bayes_pls_golite062009 |
Region A: Residues: [291-392] |
1 11 21 31 41 51 | | | | | | 1 SHISGGSSSH SGESLKCFDC QVARGKLVAV EDKCRAYEKT IRELQVQVDF LRKIQPNPMP 60 61 PVMLPPPMMP MPSPGPNNLF QNPAMRMLLN NLIHMNRPSV VP |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.