| Protein: | clec-41 |
| Organism: | Caenorhabditis elegans |
| Length: | 545 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for clec-41.
| Description | E-value | Query Range |
Subject Range |
|
|
231.0 | [0..14] | [544..15] |
|
Region A: Residues: [1-150] |
1 11 21 31 41 51
| | | | | |
1 MWFHSTLLLA ILVAVSADTC PAGFTALSTS KKCVKLITDV AKHSDATANC SSYGGHLISV 60
61 QNAIDNNAYL QLAAVSVTPY WLGIKCSLSG NPASCQWDDQ SGNAGGYNGF APGYPLVEVG 120
121 NCVYVPTSGS FAGKWLSGDC NTMSLNFICE
|
| Detection Method: |  |
| Confidence: | 12.69897 |
| Match: | 1sl6A |
| Description: | Crystal Structure of a fragment of DC-SIGNR (containg the carbohydrate recognition domain and two repeats of the neck) complexed with Lewis-x. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.13629480035749 | bayes_pls_golite062009 |
| carbohydrate binding | 0.44675717945952 | bayes_pls_golite062009 |
| protein binding | 0.059857076934361 | bayes_pls_golite062009 |
|
Region A: Residues: [151-323] |
1 11 21 31 41 51
| | | | | |
1 TAPTSPITDT CSFQYNGNCY YPSLSALPKQ DAQFSCQQAC GNLVSIHSIE ENNYVQSLFT 60
61 TNAPTYIRIG AVANNQNSNS WIDGTSWNYD NIGYSNINLG MCWSMALSND IVSTGKWISS 120
121 YCDTSLPFVC KRKVGTQCGT TSGPTQTPGQ CTSPMFMDNS GRFYSPSWPY SYI
|
| Detection Method: | |
| Confidence: | 4.09691 |
| Match: | 1g1qA |
| Description: | E-selectin; E-selectin, EGF-domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.13629480035749 | bayes_pls_golite062009 |
| carbohydrate binding | 0.44675717945952 | bayes_pls_golite062009 |
| protein binding | 0.059857076934361 | bayes_pls_golite062009 |
|
Region A: Residues: [324-545] |
1 11 21 31 41 51
| | | | | |
1 GEQNPCNYIL DTPVGSLVQI RFPVMNLDSQ ASISIYSRIE DTTPLVVLQG NSASNQWYTS 60
61 TTNTMKVVFR PCIANCPNDG VNYRWEADFK PSTDVTQPPV TVTPNPNNPS GCNSTILVAP 120
121 GSISTPNYPN YYPNFLLCMY HLSTTGGYRI NLDFGAIDTE QCCDIIEVHD GPLLGSPKLG 180
181 IVSGTWPAHA KTYQSSSNSM LVTFSTDSSG QGSGFSANFW AL
|
| Detection Method: | |
| Confidence: | 30.69897 |
| Match: | 1nt0A |
| Description: | Mannose-binding protein associated serine protease 2, MASP2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| receptor binding | 1.40618339011373 | bayes_pls_golite062009 |
| growth factor activity | 0.25853515067422 | bayes_pls_golite062009 |
| binding | 0.246892638113776 | bayes_pls_golite062009 |
