YRC Public Data Repository - Protein Structure Prediction

Protein:	CE07668
Organism:	Caenorhabditis elegans
Length:	158 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE07668.

Description	E-value	Query Range	Subject Range
gi\|82744357, gi\|... - gi\|82744357\|ref\|ZP_00906922.1\| Peptidoglycan-binding LysM [Shewanella sp. W3-18-1], gi\|82718284\|gb\|E... gi\|145564565, gi... - gi\|146292875\|ref\|YP_001183299.1\| MltD domain-containing protein [Shewanella putrefaciens CN-32], gi\|...	123.0	[0..1]	[157..278]
gi\|77808141, gi\|... - gi\|77816912\|ref\|ZP_00816029.1\| Peptidoglycan-binding LysM:SLT [Shewanella putrefaciens CN-32], gi\|77...	123.0	[0..1]	[157..278]
gi\|115365552, gi... - gi\|115377454\|ref\|ZP_01464657.1\| glycoside hydrolase, family 19 [Stigmatella aurantiaca DW4/3-1], gi\|...	119.0	[0..2]	[158..22]
gi\|88772635, gi\|... - gi\|88796049\|ref\|ZP_01111734.1\| putative membrane-bound lytic murein transglycosylase [Alteromonas ma...	119.0	[0..1]	[157..316]
gi\|78358619, gi\|... - gi\|78358619\|ref\|YP_390068.1\| peptidoglycan-binding LysM [Desulfovibrio desulfuricans subsp. desulfur...	118.0	[0..18]	[155..402]
gi\|39589456, gi\|... - gi\|39589456\|emb\|CAE74485.1\| Hypothetical protein CBG22236 [Caenorhabditis briggsae], gi\|187022099\|em... gi\|157745237 - gi\|157745237\|ref\|XP_001667715.1\| Hypothetical protein CBG22236 [Caenorhabditis briggsae AF16]	118.0	[0..1]	[158..1]
gi\|24374107, gi\|... - gi\|24374107\|ref\|NP_718150.1\| Slt family transglycosylase [Shewanella oneidensis MR-1], gi\|24348597\|g... SO2564 - transglycosylase Slt family	117.0	[0..1]	[157..278]
gi\|82403472, gi\|... - gi\|82498542\|ref\|ZP_00884032.1\| Peptidoglycan-binding LysM [Shewanella sp. MR-4], gi\|82403472\|gb\|EAP4...	117.0	[0..1]	[157..278]
gi\|114047734, gi... - gi\|114047734\|ref\|YP_738284.1\| MltD domain-containing protein [Shewanella sp. MR-7], gi\|113889176\|gb\|...	116.0	[0..1]	[157..278]
gi\|78503970, gi\|... - gi\|78688284\|ref\|ZP_00852992.1\| Peptidoglycan-binding LysM [Shewanella sp. ANA-3], gi\|78503970\|gb\|EAP...	116.0	[0..1]	[157..267]

Back

Predicted Domain #1

Region A:
Residues: [1-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIQPPSSSS ATEFCQPDES TFLVGFNRVR RYGTTQSQSS PVTPCSYTIY QVQTDDTLER  60
   61 IALKHNCSVS SLVRANKLWS PSALFMKQFI RIPIFNSQQP NLKPSLQETQ CKIVPATTER 120
  121 VDSSREEKSM KDILQRIDRN IKSFRKCDNP SSSAYDHI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.69897
Match:	2djpA
Description:	No description for 2djpA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits